Sol Genomics Network

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Unigene SGN-U578204

Unigene Basic Information

Unigene ID:	SGN-U578204
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1447 bp

>SGN-U578204 Tomato 200607 #2 (154 members)
ATAAAACACAAAAAGTCATATAAACCACAAGAATCAAAATTTACAAACAAAGCACCAAATCATTATCATATAATTAGGTACTCATAAATC
CAAAACATAAACCGAATAGTACAAGACACAAAGAGTTTGTTGGAATTAAGACAAAAAAGAAAAAAGACCTAAGTAGCATTTAAAAACAAA
GTGTCCCTAAAGACAATTTTGTTCCTAATATGAAACTTAGTAGCCTTCTGGCTTGTAGGCAATGAAACTGATACACTGCACTTGACGCAC
ATTGTCGAATCCAATGATTCTGACCCATGCTTGTGGGTATGCCTTTTTAGCCTCTTGAACCTCAGCCAACACTTGGGTTGCATCAGTGCA
CCCAAACATAGGCAACTTCCACATGGTCCAGTACCTTCCATCATAGTATCCTGGTGACTTGTTGTTCTCACGGTAGACAGTTTCTTTCTC
TAGATTCTCTCTCATCAATCAATTCGATAAGAGAGAAGAGAGAATCCCTTTGCTGGTTTACGCTAACCTGAGATCAGAAAAAAAATACCC
TTTTTCTACTCTGCATCTTCTCATCTAAACAGGGACCATGATTAAGTTGTTCAAAGTAAAAGAAAAGCAGAGAGAACAAGCTGAGAACGC
AAATGGAAAGCCACCAGTCAAGAAACAAAGTCCTGGAGAGTTGCGTCTTCATAAAGATATAAGTGAGCTAAATCTACCCAAAACATGTAG
CATATCATTTCCCAATGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATATGGGTGGCACATTTAC
GTTCTCTTTCAGTATTTCTCCAATATATCCTCACGAGGCACCAAAGGTTAAGTGCAAGACAAAGGTTTACCACCCAAATATCGACTTGGA
AGGAAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAGCCTGTGCTCAACATTAACACCATTATCTATGGCTTATATCATCTGTTCAC
GGAGCCGAATCATGAGGATCCCCTCAATCACGATGCAGCTGCTGTATTGAGAGACAACCCGAAGATGTTTGAATCCAATGTCAGAAGGGC
AATGCATGGGGGCTATGTCGGGCAAACGTTCTTCACCCGTTGCATGTAGCATCTTCAAGGCTGAAAGAATAGAGAGAGTCTGTAAAGTTT
GGATGCAAAATTATTTCAGGTGATCTTTCTGCCTCAGATTGGATTCAAATGTCTTTAAATTTAAGTCGAACCAGAAAAAAATTCCTGTAC
GCTAAGTGTAACTCTGCAATTTGTTTTTCGGATACGTTCATGTATAAGTAAAAGACCAATGATGTAGACCTATGTTTTGATGAACTTTCT
GCACAATTTGAATTCATTTTCACAACATCATATGGGAGATTCAAACATGATAAGGTGCATTTTCAGTTCATTACTTATTCCAGGATGCAC
ATGATTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
rce1	RUB1 conjugating enzyme

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	7
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	4
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	2
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	16
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	13
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	8
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	11
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (154)

Alignment image suppressed for unigene with 154 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312364	Tomato 200607 #1
SGN-U312366	Tomato 200607 #1
SGN-U333496	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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