Sol Genomics Network

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This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U577960, SGN-U579134, SGN-U581119, SGN-U591942, SGN-U592930, and SGN-U593075 in the current build, Tomato 200607 #2

Unigene SGN-U212911

Unigene Basic Information

Unigene ID:	SGN-U212911
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212911
mRNA sequence:	Length: 2496 bp

>SGN-U212911 Lycopersicon Combined #3 (185 members)
CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAAT
AAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTCC
ATCACTACTTTCGAGGCGAGTCGAACGAAGGACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGC
AGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTT
TGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTT
TGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGC
TGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGG
TGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCA
GGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAA
CCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAA
GGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA
CCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGAC
AGGAAACCTGCAGGATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATAC
AGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGG
TCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGT
TCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTT
GTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGACTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGG
GTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTA
CAGATTCTGAATGAAATCTTTTGATAAAAAAAAAAAAAAAAAAGATCTCTGCAGACGGCATAAAGTATGTCAATACTTTCTCTAAGATGG
ATGTTTATACAGAAGTTTACATTTCCAGTTACGCAAGCAAGGCTTCTAAGCAGAAAACTTTTGTTGATAAGAATAGCGGCTCGAATCCCA
AGTGGAATCACTCCATGAAATTCACTCTCGATGAATCGTTTCTCACGAAATCAGGGACTTACCTCGTTTTTCGTCTCAAATCTGACCGTA
CTTTAGGTGATAAAGATATTGGTGAGGTATCTGTTCCTGTTCATGATTTGTTCAATTCTAATGGCACAGTGGAGAGGCTCGTTGAGTATC
CGGTGATTACGGAGAGCGGAAAACCTAAAGGTACTCTGAAATTTTCCTATAAATTTGGGGAAAAATTTACAGCGCCTGAGCCGAAGAGAG
ATGTACATCATGAACCTGTTACAGCTTATCCTGCTCCAATGCATTCTGGTATGGCTTATAATCAGCAAAATTCTGGATACGGATATCCAC
CTCCGCCTCATCATCAACGTGGGTACGCATACCCACCCCAAGCTGGTGCACCGGGTTATGGATATCCGCCACCACAACCCGGGTATGGGT
ATCCGCCACCACAACCTGGGTACGGATATCCACCGGTGCAACCCCCACCGCCAAAGAGGAAGAACAAGATGGGAGGTGGATTAGGGTTAG
GGTTGGGTGCAGGATTGCTTGGTGGTTTGTTGGTGGGAGATATGGTTTCTGACGTGGGAGAGATGTCTGCTTATGGTGATGGTTACGGAG
ATGCTATGGATGATATGGGTGGTGGTGACTTTGATTTTTAGTTTAATTTTTTTAAGTTTGAAAATT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	2
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	17
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	12
Solanum lycopersicum	cLES	leaf 4 weeks	5243	8
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	6
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	6
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	10
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	6
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	16
Solanum lycopersicum	cTOS	suspension cultures	8026	9
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (185)

Alignment image suppressed for unigene with 185 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 2 | go: 5 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	34	Mitoch_carrier	285
2	22005	Mitoch_carrier	166
5	56452	Mit_carrier Mitoch_carrier Aden_trnslctor	41

Preceding Unigenes (1)

Unigene	Build
SGN-U143394	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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