Sol Genomics Network

Unigene SGN-U268220

Unigene Basic Information

Unigene ID:	SGN-U268220
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268220
mRNA sequence:	Length: 2497 bp

>SGN-U268220 Solanum tuberosum #4 (31 members)
CCTTCATCTCACTCTACGAATCTCTCAACACCATTGTAGATCACACAAAAATGGCGGAGGCAGAGACGTTTGCTTTCCAAGCTGAGATCA
ACCAGCTTTTGAGTCTCATCATCAATACTTTTTACAGTAACAAAGAGATCTTTCTCAGGGAACTCATTAGTAACTCTTCTGATGCACTGG
ACAAGATCCGTTTTCAGAGTTTGACTGACAAGAGCAAGCTAGATGCTCAACCTGAACTTTTCATTCACATCATCCCCGATAAGACCAACA
ATACCCTCACAATCATTGACAGTGGTGTTGGTATGACAAAGGCTGATCTTGTGAACAACCTTGGTACAATTGCTAGGTCTGGCACCAAGG
AATTTATGGAGGCCATTGCTGCTGGTGCTGATGTAAGCATGATTGGGCAATTTGGTGTTGGTTTCTACTCTGCTTACTTGGTTGCTGAAA
GAGTTGTTGTGACCACAAAGCACAATGATGATGAACAATATGTTTGGGAATCTCAAGCTGGTGGTTCATTCACTGTTACAAGAGATACAT
CTGGTGAGGACCTTGGCAGGGGTACCAAAATTACCCTCTTCCTCAAGGAGGACCAACTTGAATACCTTGAAGAGCGAAGGCTGAAGGACC
TGATTAAGAAGCATTCTGAGTTCATCAGCTATCCAATCTCTTTGTGGGTTGAGAAGACCATAGAAAAGGAAATCTCTGATGATGAGGACG
AAGAGGAGAAGAAAGATGAGGAAGGAAAGGTAGAGGAGGTTGATGAAGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAAATTAAGGAAG
TCTCTAATGAGTGGTCATTGGTGAATAAGCAGAAGCCCATATGGATGAGGAAGCCTGAGGAGATCACAAAAGAGGAGTATGCTGCATTCT
ACAAGAGCCTGACAAATGATTGGGAAGAGCATTTGGCTGTCAAGCACTTCTCTGTTGAGGGTCAGCTGGAGTTCAAGGCTGTTCTTTTTA
TTCCAAAGAGAGCTCCTTTTGACCTCTTTGACACCAAGAAGAAGCCCAACAATATCAAGCTCTATGTTCGCCGTGTGTTCATCATGGATA
ACTGTGAGGAATTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCCGAGGACCTTCCCCTCAACATCTCTAGAGAGATGT
TACAGCAGAATAAGATCCTGAAGTTTATTCGCAAAAACTTGGTAAAGAAGTGCATTGAGCTATTCTTTGAAATTGCTGAAAACAAAGAAG
ACTATGACAAGTTCTATGAGGCCTTCTCAAAGAACCTCAAGCTTGGTATCCATGAGGATTCACAGAATAGGTCTAAGTTTGCTGAACTGC
TGAGATATCACTCCACAAAAAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTAACCAGGATGAAAGAAGGCCAGAATGATATTTACT
ACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCACCCTTCCTTGAGAAGCTGAAGAAGAAGGGTTATGAGGTTCTTTACATGGTTG
ATGCTATTGATGAGTATTCAATTGGTCAATTGAAGGAATTTGAGGGTAAGAAGCTTGTTTCTGCTACCAAAGAAGGCCTCAAGCTTGAGG
AGACTGAAGATGAGAAGAAAAAGCACGAAGAACTAAAGGAGAAGTTTGAGGGTCTGTGCAAGGTGATTAAGGATGTTCTAGGTGACAAGG
TTGAGAAAGTGGTAGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGCTTGGTTACTGGAGAATATGGTTGGACTGCCAACATGGAGAGAA
TTATGAAGGCACAAGCTCTCAGGGACTCTAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAATCCCGAGAATGCCATCA
TGGATGAGCTCAGGAAGAGAGCTGATGCTGACAAGAATGACAAGTCCGTCAAGGATTTGGTTCTATTGTTGTTTGAGACTGCTCTTCTCA
CCTCAGGTTTCAGCCTTGATGAGCCAAACACATTTGGCAACAGAATTCACAGGATGTTGAAACTTGGTCTGAGTATTGATGAGGATAGTG
GAGATGCTGAAGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCCGAGGGCAGCAAGATGGAGGAAGTTGACTAAATCTAGGACA
CCAGTGTTTTGTTTTGATTATTATGAAAGCCCTTAACCCCAGTAGTTTTTTTTTTTTTTACTCGGCTCCACCAGCTGGACATGATATGAT
TTAAGTTTTTATGTTTTGTTTTTACTGCATTGTAGGGTAGTATTCATTGGCTCATTTTGTTACAACGTTTTAGGTGACTATAGATTCTGT
ACTTTGCATAATTGCTTTTTGCATTCTTCTATGGATGTCTGCCTTGTTAGCTTGCAATATGCTTTATAGGATTGGTCGTGACAAAGTGGT
CTGAAGATTGTTTTTGTTTTGTTCTCTTTGTCAATTATTGGATTTGATTGGAAATTGTACTCAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	181	Hsp90 ATPbind_ATPase	79
2	22083	Hsp90 ATPbind_ATPase	74
5	56336	Hsp90 ATPbind_ATPase	73
1.1	101540	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	81
2	118502	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	77
5	128990	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	76

Preceding Unigenes (1)

Unigene	Build
SGN-U243175	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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