Sol Genomics Network

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Unigene SGN-U268717

Unigene Basic Information

Unigene ID:	SGN-U268717
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268717
mRNA sequence:	Length: 2203 bp

>SGN-U268717 Solanum tuberosum #4 (71 members)
AAACCCTAAAGTTTTCCCTTAGGGTTTTATAGTTGTCTCCTCCTCCCGCTGCTTCCTTCTTTTCCCCTCCCACAACTTGTAATGGGTAAA
TCTATCAAGAAGTCCGCCACCAAGGTTGATGCTGCTGTAGTTGCTCCAACCAAACCCATGAAGAAAGGGAAGAGAGAAGCTGAGGATGAA
ATTGCCAAGTTGGTGAGTGCAAAGAAGCAGAAGAAAGATGTGGCTGTAGCACAAGCTGTTGATAAAAAGAAGACTGATGTCAAAACTCAA
AAGAAGAACAAGCAAGAAAGCAGTTCCTCTGACGATAGCTCCTCTGAGTCGGAAGATGAGAAGCCTACTAAAGCAGTGGTGCCTCCTAAG
AAAGTGGCTCCTGCCAAAAAAGGAAAGGTAGCCAGCAGTTCTGACGACTCAGATTCTTCAGATGAGGATGAAGCTCCTGCTAAGAAGGTT
GTTGCAGCTTCAACTAAGAATGGCGTTGCTGCTAAGAAGAAAGATGAGTCAAGTGATGATTCGGATGATAGCAGCTCCGAGGAAGATGTA
CCTGCACCCAAGAAACCTCCTACTAATGGCGCTAAGAAAGACGAGTCAAGTGATGATTCTGATGATAGCAGCTCTGAGGATGATGCTGTT
GTTAAGAAGGCACCTGCTGTTGTTAAGAAGGCACCTGCTGCTGCCTCTAAAAAGGAAGAATCCAGCGATGACTCCAGTTCAGATGATGAT
GAACCTCCCTCTAAGGTAGCTGCTCAACCTAAAAAAGCTCTTCAAGCTGTGAAGAAGGCTAGTGACAGCTCTGATGATTCCGATTCTGAT
TCTGATTCAGACAAGGGAAAGGCTGCTACTGAATCTAAAAAGGCTGCTACTGTATCCAAAAAGGTTGCTTCATCTGATGATGACAGTGAG
GATGATAGTTCTGAGGAGAGTGATGAAGAGCCTCAAAAGAAAAAGAGCAAGGCCTCTACCACTCCAGTTGTCTCAAAAACTCCAGAGAAG
AGTAGTTCTGAGGAATCTTCTGACTCAGAGGACTCCTCTGAAGATGAGGAGGATGACAAACCATCCAAAACTCCCAAGAAGGGTGCTGAT
GTAGAAATGGTTGATGCTCCTTCTGCTAAAGCTCAACAAACCCCTATTACTCCTAAAGCCCAAACTCCAGGGGGATCGAAAACATTGTTT
GTTGGAAATCTATCCTATTCAGTTGAACAGGCGGATGTGGAGAATTTCTTCAAAGATGCTGGAGAAGTTCAGGAAGTGCGCTTTTCTACA
CATGAGGATGGTTCGTTTAAGGGCTATGGTCATGTTGAGTTTGTCACTGCTGAAGCTGCACATAAGGCACTTGAACTTAATGGGCATGAT
CTTTTGGGCCGTGATGTGAGGTTGGACCTGGCTCGTGAGAGGGGAGAATATACACCTCGCAGTGGGAGAGATGAGAACTCATTCCAGAAG
CCGGCGGCTAGAAGTGATGGAACAACAATTTTTGTCAGGGGCTTTGACAAAAATGAGGCTGAAGACCAGATTAGGAGTTCACTGGAGGAG
CACTTTGCATCTTGTGGGAAGATCTTTAAAACAAGAATTCCTACAGACCCAGAAGGCTATATTAAAGGGATGGCTTATATTGAGTTTGCA
AATGGTGATGCTGATGCTCTAAACAAAGCTCTTGAGCTTGATGGATCAGAAGTTGGAGGGTTTAGCTTGAATGTGCAAGAAGCAAAACCA
AGGGGTGACAGTTCAGGTGGAGGTGGCAGGGGTTTTGGTGGTAGAAGTGGTGGTAGGGGTGGTGGTAGAGATAGTGGTGGTAGATTTGGC
GGTCGTGGTGGTGGAGGCCGCTTTGGTGGTGGTGGCCGCTTTGGTGGCGGTGGACGCGGTGGAGGTGGTGGACGTTTTGGCGGTGGAGGC
AGAGGACGAGGAACTCCCAACAAGCCAAGCTTCACTCCATCTGGTAAGAAGACTACCTTTAGTGACGAGTGACTTTGTCGCTGGGACTCT
ATGGCCAACTTATCTTGATCTCGTGGACGTTTTATCTTATTTTAAAAATATTATAAATTTTGTTAGCAAGAACTTTAGTAGTTAGTAGAC
AAGTCGGATAATTTTGTTTCTTTTGAGTTTATGTACCATTCTTTGTGGGTGGAAAATGAGTTTGTTCATTGTTGATATCCAGTGTTTGGT
ATCACTTTATATAATTGCTTTATATGACAAAATAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	15
Solanum tuberosum	CSCH	Tubers	5038	6
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	9
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	9
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (71)

Alignment image suppressed for unigene with 71 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	24631	RNA_rec_mot AT_hook Collagen MPPN INCENP_ARK-bind CC1_SF	8
5	59091	RNA_rec_mot CC1_SF	7
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	119797	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	12
5	130628	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U243776	Solanum tuberosum #3
SGN-U243777	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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