Sol Genomics Network

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Unigene SGN-U268938

Unigene Basic Information

Unigene ID:	SGN-U268938
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268938
mRNA sequence:	Length: 820 bp

>SGN-U268938 Solanum tuberosum #4 (60 members)
AGAATTCTGAATTGCAGTACCACAGGAGGATCTCTGAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTGAAGGATCT
CCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGCCCAGTAGCTGAAGATATGTTTCATTGGCAAGCAACAATCATGGGTCCAGCTGACAG
TCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCGTTCAAGCCTCCAAAGGTAGCTTTCAGGACAAAGGT
TTTCCACCCGAACATCAATAGCAATGGCAGCATATGCCTAGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTACT
GCTCTCTATCTGTTCTCTGCTGACGGACCCTAATCCTGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAA
GTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGGAGGGAGGGCTCCATCCCTGCTG
TGGTATTTTGTATTATCTATGGAATAGTTGCTGTGACAATGGGGCTCCGTCCCTGCTGTGGTATTTAGTATTATATATTATGTATTTAAG
AAATTGTGTTCTTATGCATAATCAAACTTAAAGGCTGCTGTGGTATTTAGTATTATATATTATGTATTAAGAAATTGTGTTCTTATGCAT
AATCGGCGGGAAAGTCGAACAGGGTCCTCCCTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGCTATCAGTTATGGTGTTAAAACT
CTATGTTGGG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ222513	ubiquitin conjugating enzyme E2

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	10
Solanum tuberosum	ACDC	Sprouting Tubers	5177	5
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	9
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TBSK	Tuber Skin	4812	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (60)

Alignment image suppressed for unigene with 60 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	25	UBQ_conjugat	316
2	21990	UBQ_conjugat	232
5	56280	UBQ_conjugat	146
1.1	101402	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	283
2	118431	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	197
5	128961	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	109

Preceding Unigenes (2)

Unigene	Build
SGN-U244131	Solanum tuberosum #3
SGN-U259393	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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