Sol Genomics Network

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Unigene SGN-U269049

Unigene Basic Information

Unigene ID:	SGN-U269049
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269049
mRNA sequence:	Length: 814 bp

>SGN-U269049 Solanum tuberosum #4 (23 members)
AAAAAAAATCAAAATTGAGTAGGAGGATTTCTGAGGGATTTTGTGTACGGAAATGGCATCCAAGAGGATTCTGAAAGAGCTCAAGGATCT
CCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTCCAGTTGCGGAAGATATGTTTCACTGGCAAGCGACACTTATGGGTCCATCTGACAG
TCCTTATGCTGGCGGAGTGTTTCTTGTGACCATTCATTTTCCACCCGATTATCCATTTAAGCCTCCAAAGGTAGCTTTTAGGACAAAGGT
TTTTCACCCAAACATCAACAGCAATGGCAGCATTTGCCTCGACATTCTGAAGGAACAATGGAGCCCGGCACTTACGATTTCCAAGGTGCT
GCTGTCAATCTGCTCTCTGCTAACGGACCCTAATCCTGATGATCCTTTGGTGCCCGAGATTGCTCATATGTACAAGACTGATAAAAGCAA
GTACGAAGCAACTGCTCGGAGCTGGACCCAAAAGTACGCAATGGGTTAGTTGCTGCTCAGACCCATTCTGGAGGGGGCTCCTTTCCCTCT
GTGAGTTTGTGGTCATTGTCTATGACATATTAAGAAGTGTTTGTTTCTTCATGTATAATCAACTCGAGAGGAAAGCTTGAATTGTGGCCT
CACTGTGAAACATTGAATTTGCTGTGTCTGTAAACCTTTAATTGCTTTTATATTCTATGGATGGGTTCAAAGTAGTAGACATTTGACCCT
TGGCAACTGAAGTAGTGATCTCTCTTACACATAAGCGCAGTCCAAAGCCTTAATACTTAAATACTTTTCTGGTTAAATTTTTAGAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ207855	ubiquitin-conjugating enzyme 8	ubiquitin-conjugating

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	4
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	3
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	25	UBQ_conjugat	316
2	21990	UBQ_conjugat	232
5	56280	UBQ_conjugat	146
1.1	101402	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	283
2	118431	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	197
5	128961	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	109

Preceding Unigenes (1)

Unigene	Build
SGN-U244802	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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