Sol Genomics Network

Unigene SGN-U269308

Unigene Basic Information

Unigene ID:	SGN-U269308
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269308
mRNA sequence:	Length: 2696 bp

>SGN-U269308 Solanum tuberosum #4 (39 members)
GCCGTGTTCTTCTTCACTCTTCATTTAATCTTCTTGCCGCTATTTTCCGGCGAGGTTTTTAGGGTTCCGTTCATAGGATGGGGTCGGCGT
TGTTGCCAGATCTAGGGACAGAGATAGTGATTCCAGTATGTGCCGTCGTTGGAATCGTCTTCTCTTTATTCCAGTGGTACCTTGTCTCGC
GTGTTAAAGTCTCGTCGGAACGTGGAGCTACTTCTCCGAGTAACAATAATAAGAATGGATATGGAGACTATTTGATTGAAGAAGAGGAAG
GAATTAACGACCAGAACGTTGTTGCGAAGTGCGCCGAGATACAGAATGCCATCTCTGAAGGGGCAACATCTTTTTTATTTACCGAGTATC
AGTATGTGGGTATCTTCATGATTGCTTTTGCAATCCTGATCTTCCTTTTCTTGGGCTCAGTTGAAGGTTTCAGCACTAAGGGCCAGCCAT
GTACTTACAACAAGGAGAAGATGTGCAAGCCAGCCCTTGCAACTGCAATCTTCAGCACGATATCCTTCTTGCTTGGTGCTGTCACTTCTG
TTATCTCTGGTTTCTTAGGGATGAAAATTGCAACATATGCAAATGCAAGAACAACTTTGGAAGCGAGAAAAGGTGTTGGGAAAGCTTTTA
TTGTTGCATTCAGGTCTGGTGCAGTGATGGGTTTTCTCCTTGCCGCCAATGGCCTCCTAGTTCTTTACATTGCCATTAATCTCTTCAAGC
TTTACTATGGTGATGACTGGGAGGGTCTTTTTGAGGCAATTACTGGATATGGGCTTGGTGGATCCTCAATGGCTCTTTTCGGTAGGGTTG
GTGGTGGTATTTACACCAAAGCTGCTGATGTTGGTGCTGATCTCGTTGGTAAGGTTGAAAGGAACATTCCAGAAGATGATCCCAGAAATC
CTGCTGTGATTGCTGATAATGTTGGGGATAATGTTGGGGACATTGCAGGAATGGGGTCTGATCTTTTTGGTTCATATGCTGAATCATCTT
GTGCTGCTCTTGTGGTGGCTTCCATCTCATCTTTTGGAATTGAACATGATTTTACATCCATGTGTTACCCCCTGCTTATAAGCTCCATGG
GGATTCTTGTTTGTTTGATAACCACCCTTTTTGCTACCGACTTTTTTGAAATTAAGGCTGTCAAAGAAATTGAACCAGCACTGAAGAACC
AACTTATTATATCAACTGTTCTTATGACAATTGGAATTGCAATTGTTACATGGACTTGCCTTCCGTCTTCCTTCACCATCTTTAATTTTG
GCACTCAGAAAGTTGTCAAGAATTGGGAGCTCTTTTTATGTGTGGCCGTTGGTCTTTGGGCTGGACTTATCATCGGATTTGTCACCGAGT
ACTACACTAGCAATGCTTACAGTCCTGTCCAAGATGTAGCAGACTCCTGCAGGACTGGTGCTGCGACAAATGTTATTTTTGGCCTTGCTC
TTGGATACAAATCTGTCATCATTCCTATCTTTGCCATTGCAATAGCTATCTTTGTCAGTTTTTCTTTTGCTGCCATGTATGGTATTGCAG
TTGCTGCTCTTGGAATGTTGAGCACAATTGCAACTGGATTGGCGATTGATGCATATGGTCCTATCAGTGACAATGCTGGAGGCATTGCTG
AGATGGCTGGCATGAGCCACCGGATCCGTGAAAGAACTGATGCCCTTGATGCAGCTGGAAATACCACTGCTGCGATTGGAAAGGGCTTTG
CCATTGGATCTGCTGCACTTGTGTCCCTGGCTCTGTTTGGTGCTTTTGTTAGTCGGGCTGCAATTTCAACGGTTGATGTCTTGACCCCCA
AGGTGTTCATTGGTTTGATTGTTGGAGCCATGCTTCCCTACTGGTTCTCTGCCATGACCATGAAGAGTGTGGGTAGTGCAGCTTTGAAGA
TGGTTGAGGAAGTGCGCAGACAATTTAACACTATTCCTGGTCTCATGGAAGGCCTTGCTAAACCTGATTATGCCACTTGTGTTAAGATCT
CGACTGATGCATCTATCAAGGAAATGATTCCACCAGGTGCCCTAGTCATGCTCACTCCCCTCATAGTTGGTATTTTCTTTGGAGTGGAGA
CACTTTCTGGTGTACTTGCCGGTGCTTTGGTATCCGGTGTACAGATAGCAATATCTGCATCAAACACTGGAGGTGCATGGGACAACGCCA
AGAAGTATATTGAGGCTGGTGCTTCAGAGCATGCAAGGACTCTCGGCCCAAAGGGTTCTGAACCTCACAAGGCTGCTGTTATTGGCGACA
CCATCGGTGACCCCCTGAAGGACACTTCAGGCCCATCACTCAACATTTTGATCAAACTGATGGCAGTTGAGTCACTTGTATTTGCTCCAT
TCTTTGCCACTCATGGTGGTATCCTTTTCAAGATCTTTTAAGGAAAGTTGGTTGTAGCCGAGACTTGTGGCATCTTTTTCAGTCAACATA
GCAAGGGATTTTTGGATTAGTTTCTAGTCAGAAGTGGAGTTTCGGTGATTTGATGATGATGATAGTTGTCACTGTAAGGAGGGTAGAAGA
AAATTGGTCAGTGTTGTAGTAAAATAGTCTTGAAGCTAGCGTATTAGCTTTCTCATATTTCAGTAACTTCCAATTTTGTCTGTACTATCA
GTATCCACGTTTAAGTTAATGGAACAACTATTCAGCTTTTCATTTGTTACAGAAGGTAGGTAGTCTTTTCATCAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	5
Solanum tuberosum	ACDC	Sprouting Tubers	5177	5
Solanum tuberosum	CSWB	Tubers	6124	4
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	7

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	734	LGT H_PPase	26
2	22669	LGT H_PPase	22
5	56859	LGT H_PPase	21
1.1	101861	Inorganic H+ pyrophosphatase - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678) - Biological Process: proton transport (GO:0015992) - Cellular Component: membrane (GO:0016020)	32
2	118985	Inorganic H+ pyrophosphatase - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678) - Biological Process: proton transport (GO:0015992) - Cellular Component: membrane (GO:0016020)	23
5	129374	Inorganic H+ pyrophosphatase - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678) - Biological Process: proton transport (GO:0015992) - Cellular Component: membrane (GO:0016020)	23

Preceding Unigenes (2)

Unigene	Build
SGN-U244922	Solanum tuberosum #3
SGN-U249274	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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