Sol Genomics Network

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Unigene SGN-U269500

Unigene Basic Information

Unigene ID:	SGN-U269500
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269500
mRNA sequence:	Length: 1736 bp

>SGN-U269500 Solanum tuberosum #4 (33 members)
CAGCCAAAAACATGCCACACTAATTGTATTTCATTCCACCGCTTTAAATACACAAAACCGCTAATATTTCTTTCTTCATTTTCAAGAACC
CTCCTCTTCTTCTCTTACTTCTCCATAATCATCAAACTGGTTTTAAAAGATGGCAGATGCAGAAGATATTCAACCCCTTGTCTGTGATAA
TGGAACTGGAATGGTTAAGGCTGGATTTGCTGGTGATGATGCACCAAGGGCTGTATTTCCTAGTATTGTCGGCCGACCTAGACACACCGG
TGTTATGGTAGGGATGGGTCAAAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTCACCTTAAAGTATCCCATTGA
GCATGGAATAGTAAGCAACTGGGATGATATGGAGAAGATTTGGCATCATACCTTTTACAATGAGTTGCGTGTTTCTCCTGATGAGCACCC
TGTGCTACTTACTGAAGCACCCTTGAACCCCAAGGCCAATAGAGAGAAAATGACACAGATAATGTTTGAGACTTTCAATGTTCCTGCCAT
GTACGTCGCTATTCAGGCAGTCTTGTCTCTTTACGCCAGTGGCCGTACAACAGGTATTGTGCTGGATTCTGGTGATGGTGTCAGTCATAC
AGTGCCAATTTATGAAGGCTATGCCCTTCCTCATGCAATTCTTCGATTGGACCTAGCTGGGCGTGATCTTACTGATTGTCTGATGAAAAT
CCTGACCGAAAGAGGTTATTCATTCACCACTAGTGCTGAACGGGAAATTGTCCGCGATATGAAAGAGAAACTAGCATATGTTGCACTTGA
CTATGAGCAAGAATTGGAGACCGCAAAGAGTAGCTCTGCTGTTGAAAAAAGCTATGAGTTACCAGATGGTCAGGTGATTACCATTGGAGC
AGAGAGGTTCAGATGCCCGGAAGTCTTATTCCAGCCATCACTTGTGGGAATGGAAGCTGCTGGAATCCATGAAACAACTTACAATTCCAT
CATGAAGTGCGATGTAGATATCAGAAAGGATCTTTATGGTAACATTGTCCTCAGTGGTGGAACAACAATGTTTCCTGGTATTGCTGATCG
TATGAGCAAGGAAATTACCGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTGGTGGCGCCTCCTGAACGGAAGTACAGTGTCTGGATTGG
AGGGTCTATCTTAGCTTCTCTCAGCACCTTCCAACAGATGTGGATAACAAAGGGTGAATATGATGAATCCGGTCCTTCCATTGTCCACCG
GAAATGCTTCTAAGCTAATCGATGAATGGAGTTCAATGTTCTCGTTATCTGCTTCAACAGTTTGGTCATAGTTCTGAGCAGGACTTTGTT
AAAGTTGGAATGTTTTGAGTTCATAAAGATGGAAGGTTTATACTGTGCTATAATAGGGTGTAAGCTTTTAGATCGTACCCAATCTTTTCT
TAATGTCATTTAAGTGTTAGTGTTGCCTACTGTTTTAGGTGTTTAGAGGTGAGTTCTTTTCCTCCTCGCTTTTAATCTCCTTGTTCTTCT
GGATTTTTGGAATTTTTTTTTCCGTGTATACTTCTTATATACTGAGTAATGTCACTTCATGGCTTATAAATCTTTGGTATATGATGTTCT
CTGTAATCTGTATCGTCTCATGCTTTATACCATGAGAGGCATTGTAATGGCAGAATCAGAATTTTTACTATATAAAGAAGTTAAGATAAT
TCCAAAAAAAAAAAAAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ac101	actin 101

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	CSCH	Tubers	5038	7
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	7
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	107	Actin_like	123
2	22031	Actin_like	115
5	56298	Actin_like	104
1.1	101492	Actin/actin-like - Molecular Function: protein binding (GO:0005515)	103
2	118476	Actin/actin-like - Molecular Function: protein binding (GO:0005515)	96
5	128974	Actin/actin-like - Molecular Function: protein binding (GO:0005515)	93

Preceding Unigenes (2)

Unigene	Build
SGN-U244836	Solanum tuberosum #3
SGN-U254172	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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