Sol Genomics Network

Unigene SGN-U269724

Unigene Basic Information

Unigene ID:	SGN-U269724
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269724
mRNA sequence:	Length: 2083 bp

>SGN-U269724 Solanum tuberosum #4 (30 members)
GAACCAAAACAAATCCCACATTTCTGTTTCTCAGCCGCCGAGCAACCAAAACGCCAAAATGTCAGTCGATTCAGCGCCGCCGGTGGAAAA
ACTCACCCTAAGCGACGCTGTAGAGGAGGCGAAATTCTCTCAACGCGTCCCGATCCGTTCAATCGTAGGTCGTCCTGACGGTGGAGCTGG
ACTCGCCGGAAATGTTGTCAAAATCGGTGGTTGGGTCAAAACAGGACGAGAACAAGGCAAGGGTTCATTCGCTTTCCTTGAAGTGAATGA
CGGTTCATGCCCAGGGAATCTCCAAGTGATTGTTGATGCTTCAGTTCATAAGCTTGGTGATTTGGTACTTACTGGTACTTGCGTACATGT
GGAAGGTGAGTTGAAGGTTCCTCCTGAAGGTGCGAAGCAGAAAGTTGAGCTTCGTGTTCAGAAGGTTATATCTGTGGGTACCGTTGATGC
TGCTAAGTATCCATTGCCGAAGACTAAGTTGACGCTTGAGTTTTTAAGGGATGTTGTTCATCTTCGATCCCGAACGAACACTATTTCTGC
TGTTGCTAGAATCCGTAATGCCTTAGCTTATGCCACCCATACATTCTTCCAAAACAATGGGTTTCTTTATATCCACACCCCAATCATCAC
AACAAGTGATTGTGAGGGTGCTGGTGAGATGTTCCAAGTTACTAGTTTGATAAGCGAAGCTGAAAAGTTGGAGAAGGAGCTGAAAGAGAA
TCCTGCTCCTTCAGATTCTGACATTCAAGCTGCTGAGCAACTTGCCAAAGAGAAAGGTGAGGTAGTTGCTCAGCTAAAAGCTAGTAAGGC
GAGCATGGACAAAACTGATCCCAATATTGCGGACATCAACAAGAAAATCAGTGCTGCAGTTGCCGAGCTACAGCGAGCTAAAGAGAATCT
CCTGAAGTTGCAAGAGAGATCTAAATTGGGAGAAAGATACAGACTCTCTGCTGGTATTCCTAAAAAGGATGGAAAAATTGATTACTCTGA
GGATTTTTTTGGACGACAAGCTTTCTTGACAGTGTCTGGCCAACTCCAAGTTGAAACCTATGCATGTGCACTTTCTAGTGTGTATACTTT
TGGACCAACTTTTCGAGCTGAACAGTCCCACACTACTCGGCATCTTGCAGAGTTCTGGATGGTGGAGCCTGAAATTGCTTTTGCAGATAT
ACAGGATGATATGAATTGTGCTGAGGCGTATGTGAAGTTTCTGTGTCAGTGGTTACTTGACCATTGCCTTGATGACATGGAATTTATGAC
TAAATTTGTAGATAAAGATGCTCTGAGTAGACTTAGAATGGTTGCCTCATCGAACTGCCATCGGATAACTTATACAGAAGCCATAGATAT
TCTTGAGGTAGCAGCTAAAGTGAAGAAATTTGAAAATAAAGTAGAGTGGGGGATTGACTTAGCATCTGAACATGAAAGATATTTGACCGA
AGAGCATTTTAAGGCACCTGTTATTGTGTTCAACTACCCAAAAGGGATAAAAGCATTTTACATGAAGGTGAATGAAGACAACAAGACAGT
TGCTGCCATGGATCTGCTTGTACCAAAGGTGGGAGAACTAATTGGAGGAAGCCAAAGAGAAGAGAATTATGAGGTCCTCAGATCAAGGAT
ACTGGATATGGGTCTACCACTAGAGCCATATGAGTGGTATCTGGACCTGAGGCGCTATGGTACTGTAAAGCACAGTGGTTTTGGTTTAGG
CTTTGAACGAATGATTCTGTTTGCCACCGGGATAGAAAACATTCGGGATGTCATTCCCTTCCCTAGATATCCAGGGAGAGCCGATCTTTA
AGTGATATCGGTAGACATGGATGCCTTTTTATTTATTTTCGAAATTATGATACCATTTTCTAAATTGTAATTGCTATTTAAAAGTTTCAA
ACAAATTCAGATACAGGAAACCTGTATCATATTGTAATCTCTCAGGAGGGGTGGAAGTGTGAGCGCATTTACAGCGTATTTCATCTAACA
CTTGTTGCTGGGTTTACAAATGCATTCTGGTTTTTAGTAAAACTGATTTTGTAGTAGGCTTTGTTAGACATACAATATAATCTTTGTTAT
TGGAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	8
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 9 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	337	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	49
2	23204	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	15
5	58345	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	9
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	119485	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	15
5	130651	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U244248	Solanum tuberosum #3
SGN-U244249	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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