Sol Genomics Network

Unigene SGN-U269796

Unigene Basic Information

Unigene ID:	SGN-U269796
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269796
mRNA sequence:	Length: 1235 bp

>SGN-U269796 Solanum tuberosum #4 (29 members)
CTGCTCTACAACTACTAGAGCTTCCTTTCATTCTCTTCTTCTTCTTCTTACTCCGAATTTGAGCTTCAACCATGGGGAAGGGTCCTGGAC
TTTACACTGAAATCGGAAAGAAGGCTAGAGATCTGTTGTACAAGGACTACCAGAGTGACCACAAGTTCTCTATCACCACCTACTCTCCCA
CCGGAGTTGTTATTACTTCATCAGGATCGAAGAAAGGTGATCTGTTTTTGGCTGATGTTAACACTCAGCTGAAGAACAAGAATGTTACAA
CAGACATTAAAGTAGACACAAACTCCAATCTTTTCACCACCATTACCGTTGATGAAGCTGCTCCTGGGTTGAAGACAATTTTAAGCTTCA
GAGTTCCTGACCAAAGGTCTGGAAAGTTGGAAGTTCAATATCTACATGACTATGCTGGGATATGCACTAGCGTAGGGTTGACAGCAAACC
CTATTGTTAACTTTTCTGGTGTAGTGGGTACCAACATTATTGCTCTTGGAACTGATGTATCCTTTGACACCAAGACTGGAGATTTCACCA
AATGCAATGCTGGTTTGAGCTTCACAAATGCCGACCTTGTTGCTTCTTTGAATCTGAATAACAAGGGAGACAATCTGACTGCATCATACT
ACCACACAGTGAGCCCTCTTACAAGTACCGCTGTTGGGGCTGAGGTGAATCACAGCTTCTCCACCAATGAGAACATCATTACCGTGGGTA
CTCAGCACCGATTGGATCCTTTGACCAGTGTGAAGGCAAGGATTAACAACTTTGGCAAGGCCAGTGCTCTGCTTCAACATGAGTGGCGTC
CAAAGTCCCTTTTCACAGTTTCAGGAGAAGTGGACACTAAATCTGTTGACAAGGGTGCCAAGTTTGGACTTGCTTTGGCTCTCAAGCCAT
AGGTTTTTCATCTTTAATCCATAGACATGAGGCATTACTGCAATTTGAAGACTTGTTCTGTAGTGTTTTTTGCACTGTAAAAATAAATTT
AGGTGGTTGCTTGAACCTATGCATCCTTGTTCTAAGTCCGTACATTCTTATTCGCCCTTTTTGAAAATGATGGGTGGTGCCCTATATTGA
TTCTATGACCTTTAGAGGTCAAGCTTGAGATTTTGTCATAATCAACAGCCAATTTTTGAGTACTTTGGTCCATGTTTACAGCTCAGAAAC
TGTTGAGACTCTTTCATGTAATGGCCTGGTCGGTCAGATAAATCTCATACAATGCTATATGCTGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ppom34	pPOM34 mitochondrial 34kDa porin

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	9
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	308	Porin_Euk	51
2	22197	Porin_Euk	46
5	56655	Porin_Euk	27
1.1	101673	Porin eukaryotic type - Cellular Component: mitochondrial outer membrane (GO:0005741) - Biological Process: anion transport (GO:0006820) - Molecular Function: voltage-gated ion-selective channel activity (GO:0008308)	48
2	118656	Porin eukaryotic type - Cellular Component: mitochondrial outer membrane (GO:0005741) - Biological Process: anion transport (GO:0006820) - Molecular Function: voltage-gated ion-selective channel activity (GO:0008308)	39
5	129295	Porin eukaryotic type - Cellular Component: mitochondrial outer membrane (GO:0005741) - Biological Process: anion transport (GO:0006820) - Molecular Function: voltage-gated ion-selective channel activity (GO:0008308)	27

Preceding Unigenes (1)

Unigene	Build
SGN-U244388	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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