Sol Genomics Network

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Unigene SGN-U269910

Unigene Basic Information

Unigene ID:	SGN-U269910
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269910
mRNA sequence:	Length: 1550 bp

>SGN-U269910 Solanum tuberosum #4 (27 members)
AGAACTAGTCTCGAGTTTTGTTTTTGTTTTTTTTTTTTTTTTCCTACTCACCTCTCTGTATTTTTGTTTGAAACAGCAACAAGAAGATAC
CCTTTTTGGGCTTTTCCTTCTTTGTTGTGTGTATATATAGAGGTAGGAGTTTGTGGGGGTGTAAAAAGATTACAACTTTGAGTAGTACCA
AATGATAGGGGTAGAAGATTTGAGCTTGGACAAGCTGTTTGTGAACGATCGTAGCAGAGGTGGGGTTTGTAAAATGGGGGGTGGGGTGAT
GATGATGGGAGAGTGGAAGGATATACCTATGGAGTTGTTGTTGAGGATTGCTTCACTTGTGGATGATCGGACGGTGATTGTGGCTTCTGG
TGTTTGTAGTGGATGGAGAGATGCAATTTCTTGGGGACTCACTCGTCTTTCCCTTTCTTGGTGCAAGAGGAATATGAACAATTTAGTGCT
GACACTTGCCCCCAAGTTCACGAAGCTGCAGGTTCTAACTCTTAGACAAGATTTACCACAACTTGAGGATGTTGGTGTCGAGACAATTGC
CAATCACTGTCATGAATTGCAAGACCTTGATCTTAGCAAGAGTTTTAAGCTAACTGATCGTTCCCTTTATGCTTTAGCTCACGGCTGTCC
AAACCTCACAAAGCTGAATATCAGTGGGTGTTCTGCTTTCAGTGATAGCGCTGTTGCATACCTAGCTGAGCATTGCCGAAACCTAAGAGT
CTTAAACCTTTGTGGTTGTGTTAAAGCTGCAACTGATAAGGCATTGAAGGCTATTGGTTACTACTGTAACCGACTGCAGACTGTAAATCT
TGGTTGGTGTGATAAAGTTGGTGATGAAGGTGTAATGAGTTTGGCTTATGGGTGTCCTGATCTCAGAGCCCTCGATCTGTGTGGCTGTGT
CCTTATAACAGATGAGACTGTGATTGCTTTGGCAAACAATTGCACTCACTTGAGATCCCTCGGCCTATACTTCTGTCAGTACATCACAGA
TAGGGCAATGTACTCTCTAGCTCAGAGTCGGGTCAAGAACAAGCACGAGATGTGGGCATCTATGAAGAAGCACAGGTACGAGGACGAAGG
GCTTATGAATCTAAACATCAGCCAATGCACTGCTCTCACACCTCCCGCCGTTCAAGCAGTATGCGAAGCATTTCCTGCTCTGCACACATG
CCCTGAGCGACATTCCCTTATCATTAGCGGATGCCTGAACTTAACATCAGTGCACTGCGCCTGCTCTGTCCAAGCTCACCGTGCGCGTGT
TCTCCATCCAGCTCACTGAGTGTTCTATGGAGGAGAAGTTACCAAGTTTCGAAGCCGTCATAGAGGGAGAGAAGAAAAATAGGGCGAGAA
GGTTGAAACGCCCTTGTACATATTTGTTTGTGAAAAAACTATGCTGGACAATCTAGGCTGTTTAAGCCAAACAGGTTCTATTTGTTTAAT
CTGTTGGACTGAGAACTTGTTGGTTTATGTCAAAACTCTTAAGACTCCTTTCATGTGTTGAGTATTTGGTGAAAAAAAAAAAAAAAAAAA
AAAAAACTCGAGACTAGTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	6
Solanum tuberosum	ACDC	Sprouting Tubers	5177	4
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (27)

Alignment image suppressed for unigene with 27 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	58	LRR	219
2	25026	LRR_cys LRR F-box	7
5	59042	LRR_cys LRR F-box	7
1.1	101429	Cyclin-like F-box	190
2	121442	Leucine-rich repeat Leucine-rich repeat cysteine-containing Leucine-rich repeat cysteine-containing subtype Cyclin-like F-box	6
5	131656	Leucine-rich repeat Leucine-rich repeat cysteine-containing Leucine-rich repeat cysteine-containing subtype Cyclin-like F-box	6

Preceding Unigenes (1)

Unigene	Build
SGN-U245150	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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