Sol Genomics Network

Unigene SGN-U270096

Unigene Basic Information

Unigene ID:	SGN-U270096
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270096
mRNA sequence:	Length: 1322 bp

>SGN-U270096 Solanum tuberosum #4 (21 members)
CTCCTCTCGACTCGTGCTCTCTCATCTTCTAGGTTAGCTGAGCCAGTTGAGTTTGGGGTACTCAGAGATAGAAATCATGTTTTTTGATGG
ATATGGATATCATGGAAGATCATTTGAACAGACATACCGGTGTTATCCTGCATCATTCATTGATAAGCCACAACTAGAAAATGGAGACAA
AATTATAATGCCTCCCTCTGCCCTTGATCGTCTAGCATCACTTCACATTGATTACCCAATGTTGTTTGAGCTTCGAAATACTTCCACGGA
GCGGGTTTCTCACTGTGGGGTTTTGGAGTTCATTGCAGAAGAGGGCATGATATATATGCCATATTGGATGATGGAAAATTTATTCCTACA
AGAAGGCGATACTGTGACAGTGAAAAATGTAACTCTTCCTAAGGGTAAATATGTCAAGCTACAACCCCATACGAAGGATTTTCTGGATAT
TTCTAACCCAAAGGCCATCTTGGAGACAACACTCAGAAACTTTTCCTGCTTAACCACAGGAGATAGCATCATGGTGGCTTACAATAATAA
AAAATATTATATAGACATTGTGGAAACCAAACCTTCTAATGCAATAAGTATTATTGAGACCGATTGTGAAGTAGACTTTGCTCCTCCACT
TGATTACAAAGAACCTGAAAGAGCGGCTCCTTCTCGTCCAAGCAAGGCTCCAGCAGAAGTTGAAGAGGCTGCCGCAGAAGTTGAGCCTAA
ATTCAACCCTTTTACTGGTGGAGCAAGACGTTTGGATGGGAAACCCTTAAAACAGCAACCTCCACCTTCCTCTTCTGGGTCCTCAGACAA
GCAAGTCGATGTTACTAATGGTGGTAAGAAGTCTGCTGCTGGAGCTTCAAGTTCCCAAAACTCTAGTCGTCAGTCACAAGGGAAGCTTGT
ATTTGGTTCAAATGCAAACCGTGCTCCTGAGAAACAGAAGGAACCTGTGAAAGAGGAACCTCCAAAGAAAGAAGAACCCAAGTTTCAGGC
TTTCTCTGGGAAAAAGTACTCTTTGAGGGGTTAATTGCATATTAACCTTTCTTTTGTCAGTCAAATATCTGAATTATATTTAACTTATAT
AACTTACTGTATAAATCCATACAAATTAGGTTTCATTGACTATTGCCAATGATGGAATGATGCACTCCTATTCATGAGAGTGATCTTAAA
AATGGTTGGTTGGCGTAGACTCTCTTATAAAGGCATTGTTTGTTTTATTACTCTTGTTTCGTGGTCTTTAATTTTTGCTCATCAAATTTG
TGGCTTTTAGTTTTTATCTATGCCTTTCATTTTAATGAAAATTTGTGGGCTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ235202	ubiquitin fusion-degradation protein

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	566	UFD1	32
2	23251	UFD1	14
5	57442	UFD1	13
1.1	102147	Ubiquitin fusion degradation protein UFD1 - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	20
2	120674	Ubiquitin fusion degradation protein UFD1 - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	8
5	130939	Ubiquitin fusion degradation protein UFD1 - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U244701	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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