Sol Genomics Network

Unigene SGN-U270163

Unigene Basic Information

Unigene ID:	SGN-U270163
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270163
mRNA sequence:	Length: 2052 bp

>SGN-U270163 Solanum tuberosum #4 (24 members)
ATAGCCCTTATTTCCTTTTTCCCCCTGTTTTCTCTTCATCGCCACCCATGGCCGCCGCCGCCGTATCTACCGCCTCTTCCGCCGCCGTCA
CCAACAAGTCTCATCTTTCATCGTCCCTCGACAAACCCTTTTCTTCTCCATCCCAAAAGCTCTTATCTTTAGCCGCTAAAACCCTCCCAA
AACCCTATCACCACCATCACAGAACTCTCATCACGGCCGCCTCCAAGAACCCATTAACTGACGTCGTTTCGTCCAAACCCAACCCGGATG
GCCATTCTTTTGATTCCTATTTCGATGATGACGATAAACCCCGTGAAGAGTGCGGCGTTGTGGGTATTTACGGTGACTCTGAAGCTTCTC
GTCTTTGCTATTTAGCCCTTCACGCGCTTCAACACCGTGGCCAAGAAGGCGCCGGCATTGTTTGCGTTAATGATAACGTTCTCAAGTCTA
TTACAGGTGTTGGGTTGGTCTCTGATGTGTTTAGTGAATCGAAACTTGACCAACTCCCTGGCGATTTGGCTATTGGTCATGTAAGGTACT
CTACTGCTGGTTCTTCTATGTTGAAAAATGTTCAACCTTTTGTTGCTAGTTATAGATTTGGGTCAGTTGGTGTTGCCCATAATGGGAATT
TAGTGAATTACAAACAACTTCGTGGTGAGCTTGAAGAGAATGGCTCAATTTTCAATACTAGTTCTGATACTGAGGTGGTTCTCCATCTTA
TTGCTATATCAAAGGCAAGGCCTTTTCTTTTGAGGATTGTTGAGGCTTGTGAAAAGATTGAGGGTGCTTATTCTATGGTGTTTGCTACTG
AGGATAAGTTGGTTGCTGTTAGGGATCCTTATGGGTTTAGGCCATTGGTTATGGGTAGGAGAAGTAATGGTGCTGTTGTTTTCGCGTCGG
AGACGTGTGCTTTGGATTTGATTGAGGCTACTTATGAAAGGGAAGTTCTTCCTGGTGAGGTTGTTGTGGTGGATAAAGAAGGGGTTCAAT
CTATTTGTTTGATGCCTCATCCTGAGCCTAAATCTTGTATCTTTGAGCATATTTACTTTGCCTTGCCTAATTCAGTGGTGTTTGGAAGGT
CTGTATATGAGTCTAGGCGTGCTTTCGGGGAAATTCTAGCTACTGAAGCTCCAGTGGAATGTGATGTTGTGATAGCTGTTCCTGATTCAG
GTGTTGTGGCAGCACTTGGCTATGCTGCTAAAGCAGGGGTTCCATTTCAACAAGGTTTGATAAGGTCGCACTATGTTGGTAGGACATTCA
TCGAGCCATCGCAGAAGATCAGGGATTTCGGAGTGAAACTCAAGCTCTCACCAGTTAGGGCAGTGTTGGAGGGGAAAAGAGTTGTGGTTG
TGGATGATTCGATCGTTAGAGGGACAACCTCGTCCAAGATTGTGAGGCTGTTAAAGGAGGCAGGTGCAAAAGAGGTTCACATGAGGATTG
CAAGCCCTCCGATTATAGCTTCTTGTTATTATGGAGTGGACACTCCTAGCTCAGAGGAGTTGATATCTAACAGAATGAGTGTGGAGGAGA
TTAGGGAGTACATTGGATCGGATTCACTAGCCTTTCTCCCAATTGAGAGCTTGAATAAGATGTTAGGCAGTGATTCTAAAAGTTATTGCT
ATGCTTGTTTTTCAGGAAACTATCCCGTCGAGCCAACAGGCAAAGTTAAAAGGATTGGGGACTTCATGGATGATGGATTAAGTGGGGATA
TGGACTCCATTGATGGTGGTTGGCTACCAGGAAGTAGTAAAGTTCAGAAGAAAACCATCTTGAATGAAGTTAGAACCAGTTAAATTTTAC
ATGTTGCTTAGTTTTTGCTTTGGATTTTTCATGCTTTAACTATAGAAAATTCAATGCCTTTTAAGTTTCTTTTTTTCTCCCCCCTCCAAG
TCATTCTTCTGTACTTGTATTTGGGATGTTACATCAGATTATCAATTAATCAGATGTAACATCCCAAATACAAGTACAGAACTAATGACT
TCGCACGCGGGATGTTACATCAGATTATCAATTAATCAGAATGGTTAACCATAGGTATTTGATTTGCCAAAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	9
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1467	Amd_phspho_trans GATase_2 GlmS	13
2	24607	Amd_phspho_trans GATase_2 Pr/py_rp_transf PRTransferase RibP_Ppkin Asn_synth_AEB GlmS	8
5	58644	Amd_phspho_trans GATase_2 Pr/py_rp_transf PRTransferase RibP_Ppkin Asn_synth_AEB GlmS	8
1.1	101594	Glutamine amidotransferase class-II - Biological Process: metabolism (GO:0008152)	65
2	121049	Amidophosphoribosyl transferase - Molecular Function: amidophosphoribosyltransferase activity (GO:0004044) - Biological Process: purine base biosynthesis (GO:0009113) Glutamine amidotransferase class-II - Biological Process: metabolism (GO:0008152) Purine/pyrimidine phosphoribosyl transferase - Molecular Function: transferase activity (GO:0016740) Phosphoribosyltransferase - Biological Process: nucleoside metabolism (GO:0009116)	7
5	131289	Amidophosphoribosyl transferase - Molecular Function: amidophosphoribosyltransferase activity (GO:0004044) - Biological Process: purine base biosynthesis (GO:0009113) Glutamine amidotransferase class-II - Biological Process: metabolism (GO:0008152) Purine/pyrimidine phosphoribosyl transferase - Molecular Function: transferase activity (GO:0016740) Phosphoribosyltransferase - Biological Process: nucleoside metabolism (GO:0009116)	7

Preceding Unigenes (1)

Unigene	Build
SGN-U244421	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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