Sol Genomics Network

Unigene SGN-U270404

Unigene Basic Information

Unigene ID:	SGN-U270404
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270404
mRNA sequence:	Length: 1734 bp

>SGN-U270404 Solanum tuberosum #4 (20 members)
TTATGAGTTATGAGTCTTACTTCCTCTTGTGTGTAAACTTAACAAATATCAAAAAAATATATACATTGAATTTATTCTCAATTTTTTTTT
TCTATAATGGCTGGGATGTGTTGTGGGGTTAATATAGCTGAAACTGAGGCTACTGCACCAGTTGAGCCAAGTTCAGAAGCTGCAAGGAGA
AGAAGAATGGGAATTCATCAGTTCCGTTTTGTACCCACCGATGCTGCAGCTGTTTCCTGCAGCATCGGTGGCGGTGCAGGAAAATGGACG
GAAAAGGCATAGGATTGAGAAAGTTATTGATAATAAAAAGAGACAGAAATTGGAAACTAGTGTGACGATTTCGTTGTCACCTCCGCCGGT
GGCGGTGGTGGTGGCGGATGAACAGAAAGGAAAGGATAATGAAGTGTTGGATCTGTCGGAATCTGGTTCTCAATCTGTTGAAATTGAGCC
TGATTTACCCAAATTTGGTGCGACTTCGGTATGTGGAAGAAGAAGAGATATGGAAGATGCGGTTGCAATTCATCCTTCTTTTTGCAAAGA
GAATAGTGAAAGCTCAAGCAATTTACATTTCTTCGGTGTTTACGATGGCCATGGCTGTTCCCATGTGGCGATGAAGTGTAAAGATCGAAT
GCACGAGATAGTGAAAAACGAGGTGGAGAAGGAAGAAACTCCATGGAAAGAAGCAATGATTCAGAGCTTTTCTCTAATGGATAAAGAAGT
TGTCAACTATTCTAGCACACTTCGATCTTCTACCTCAGGTTCCAATTGTAGATGCGAGCTTCAGACTCCACAGTGCGATGCCGTTGGATC
AACTGCTGTCGTTGCCGTTGTAACTCCGGACAAAATCATCGTCTCCAATTGCGGTGATTCTCGTGCCGTCCTCTGTAGAAACGGCGTCGC
TATTCCTCTTTCCGTTGATCATAAGCCGGATCGACCTGATGAATTGAATCGGATACAAGAAGCCGGTGGCCGTGTTATATATTGGGACGG
AGCTAGAGTTCTCGGCGTTTTGGCAATGTCTCGAGCAATTGGCGACAATTATTTGAAACCATATGTTATATCAGAACCGGAGGTGACGAT
AACAGATCGAACCAACGAAGACGAGTGTTTGATATTAGCCAGTGACGGATTATGGGACGTGGTATCGAACGAGACCGCGTGTGGCGTGGC
ACGTATGTGTTTGCAATCGAGACGGCCACCGTCTCCGGCGGGTTCGCCGGGAAATGACATTACGGTGACCGGCGCCGGAGAAAGCTCCGA
CAAGGCCTGTTCAGATGCATCAATTCTGTTGACGAAATTAGCCTTGGCTAGGCACAGTAGTGATAATGTTAGTGTTGTGGTGGTGGATTT
GAGAAAAAATGTATAACATTATGATGGTGATTAGTACTAGTTTTAATTTTAATTAATTAATCAAGTGTATAATTAAGGGGAAACTCTAAT
TTTAGGTTTTAATTAGCATGGGTTGTGCTAATGAAGCTAAGATTGAAGATGATGTTTTGATTTATTAGTTTAGCTGATTTAGCTGCCTAT
GTTGATGATTAGTAATGCTAATTATTATTATTATTATTATTACTATATTTTAGAGAAATGGAGATGGAAATTGTAAAGAGGTGGATCTTC
TCTCCAACTGTCCCAGATTTTATGTGAAATATAGAAAATACAAAATCATATTTTTATTTTTGTTTATTATTATTGTAATTACTGGAAAAA
AAAAAAAAAAAAACTGGAGACTAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	22	PP2C-like	349
2	21995	PP2C-like	211
5	59963		5
1.1	101395	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	322
2	118451	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	125
5	129633	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	17

Preceding Unigenes (2)

Unigene	Build
SGN-U246583	Solanum tuberosum #3
SGN-U250954	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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