Sol Genomics Network

Unigene SGN-U270615

Unigene Basic Information

Unigene ID:	SGN-U270615
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270615
mRNA sequence:	Length: 1719 bp

>SGN-U270615 Solanum tuberosum #4 (19 members)
ATGCCTTTTGTCTTCAAAAGTTGATTCGTCGTCCCTCGCCGGCGTGTTTTTCTCAGTTCAATAAAATGGATGTGATTTCGGCGGCGGTGG
CGGCCGGCGGCGGTGGAGGTCCGGCGCCGTTCTTGTCGAAGACATATGAGATGGTGGATGATTCGCAAACTGATGACATCGTATCATGGA
CTCCGACTGGTCACAGCTTTGTCGTGTGGAATCCTCCAGAATTCGCTCGAATTCTTCTTCCTACTTATTTCAAACACAACAATTTCTCCA
GTTTCATTCGACAGCTCAATACTTACGGCTTCCGGAAGATTGATCCAGAAAGATGGGAATTTGCCAATGAGGAATTCTTGAAGGACCAGA
AGCATCTACTTAAGAACATTCATCGTAGAAAACCCATTCACAGTCATAGTCACCCTCCAGGTTCCACAGTTGATCCAGAAAGAGCTGCAT
TTGAGGAAGAGATTGATAAACTTACACGTGAGAAGTCTGGGCTCGAGACTAATATCTCAAGGTTCAGACAGCAACAATCTGCTGCAAAAC
TCCAGCTAGAAGAACTAACTGGGCGGGTTGGCAGTATAGAGCAAAGGCAGGAGAGTTTACTGACATTTGTTGAGAAGGCAATTCAAAATC
CTGACTTTGTTGAGCGTCTTGCTCAGAAACTCGAGTCCATGGATATTTCTGCATTTAGTAAGAAGAGGCGATTGCCTCAAATCGACAGCA
CTCAACCAGTCCAAGAAAGTATGTCGGTGGACAACCATAGCAGTTCTAGAGTTGAGTTTGGGAACCTTTCCCAGCAAGACTTTTCAAATA
AGCTCAGGCTTGAATTGTCACCTGCTGTTTCAGATATCAATGTGCTTTCATGCAGCACCCAAAGTTCGAATGAAGATGGCGGAAGCCCTG
CACATAGGAGAATATCTGAAGGATGGTCCAGAGAAGTGCAACTTCGAACGGGAGGAGCAATTTATACCCCTGAAGCAATAGAACTATCAG
ATACAGGGACGTCTTTTATGTTGAAGATGGATTCATCTCTACCTCGTGCTTCAAGCAATGTTGAAAGCTCAAGACTGCATTCCTTGCCAC
AAAGCCTGACATCTAACGAGGAAGTTGACGGTCACATTTCCTGCCAACTGAATCTTTCTTTGGCTTCATGTCTTTCACAAGTTGATAAAA
ATCAATATTCAGTGAGGATGCCTCAAATAGGTCAAGAGATAGGTAAACGTTTCGAATCACAGTCTGATGCCAATGACAAAATCCCTCCTA
CTGATGACAAATCTTTGCCACCTTCACATGATGCAACTGCCAACAAGCAAGTGCCTGCAGCTGCTCCTGTTCGTGTGAACGATGTCTTTT
GGGAACAGTTCCTTACTGAAAGACCAGGCTGCTCGGATAACGAAGAGGCTAGTTCTAGCTACAAAGGGAACTCCTACGACGAGCAAGACG
AGAGAAAATCAAATCAAGGAGTAGCTAGTAACACAAGAAAAGTGGAACAGCTTACCCTTTGAGTATATGAAGTTGTCATTGAAGGCACTT
GAAACATTTCAGTCCTATACTGCATGGTTTGTAACTATCAATCTCTGTTAAAGCCTATTTTTTCCTGTTGTTGTTTTGGGATCATTATAT
GGCTTTGTATGTATACAAATAATGTTATGATAAATATACTTCTGAGCAAATAAGATGTGTATTTCCTCGTGCCGAATAACTGCAGGGCCG
GGGGATCCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	145	HSF_ETS HSF_DNA_bind	92
2	22076	HSF_ETS HSF_DNA_bind	76
5	65002		2
1.1	101510	HSF/ETS DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Winged helix repressor DNA-binding Heat shock factor (HSF)-type DNA-binding - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	95
2	118501	HSF/ETS DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Winged helix repressor DNA-binding Heat shock factor (HSF)-type DNA-binding - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	77
5	138282		2

Preceding Unigenes (2)

Unigene	Build
SGN-U246071	Solanum tuberosum #3
SGN-U254977	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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