Sol Genomics Network

Unigene SGN-U271985

Unigene Basic Information

Unigene ID:	SGN-U271985
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271985
mRNA sequence:	Length: 1637 bp

>SGN-U271985 Solanum tuberosum #4 (12 members)
CAAAACCCTAAACCCTAGACGCTTGTTTTCTCTCCTCTGTTGTACCATCACAACAATGGCTAAAACTTTGAACGAAGAAACTGTCAAGAA
GGTCATTCGTCAGGTTGAGTTTTACTTCAGTGATAGTAATCTCCCAAAAGATGGGTTTCTCAGGAAAACTGTGGAAGAAAGCGAAGATGG
GTTGGTAAGTTTAGCTTTGATATGTTCATTTTCACGGATGAGGTCTCACTTGGATTTGGGGGTGGCAAAGCCAGAAGATATATCAGATGA
TACCGTACAAGCTGTTGCTGAAGCTTTAAAAGCTTCTTCTTTTCTTAAAATTTCGGAAGATGGGAAGAAAGTTGGTAGAGTCAGTGAGCT
TGCAAAGCCTGAGGAGGTTATTGAGCAAATTGATGTAAGGACGATTGCTGCATCCCCTCTGGAATACAGTGTCAAGCTGGAAGACGTGGA
GTCTTTCTTTGGTCAGCATGGCAAGGTTAACAGTGTGAGACTGCCTCGTCATGTAGCTGATAAAAGGGTGTTTTGTGGCACTGCTCTTGT
TGAGTTCTCCAATGAGGAAGATGCGGTTAACATTGTGAAGCAAAACTTGGTTTATGGAGGAGTTGAATTAGAACTGAAACCAAAGAAAGA
TTTTGATGTTGAAAGAGCCATTGAAGAGAAAGAAGTTGAGAAAAACCATCCTCGTAGTGGTCCAAATAGTAAAAATAATTCGAATTCGGA
GCTAGACTATCCAAAGGGCTTGATCATTGCATTTAAGTTGAAGAGAATCTCTGCTAAAAGCTCTACAGAACAGAATGGTAATCATGAACT
GGCTACTGAAAGCGCAAGTGCTCCTGAAACAGGAGGCAACAAAGATACAACAAAAGACAATGTTGAAATGACAGATGAGAAGGTACCAGA
AGGTATTAAAGATGGAGACAATGATGAAAATGTTAAGAAGGGTGATAAAAAAGATGCAGAGGATGGAAATGGGGAGACTGATGTTCAGAA
TCCTGAAGTTGCCGAGAAATCCATGGACAGTCCAACTGAAGATGATGAGCAAGCTCCAGCTGAAGAAAAATTATCCATTGCTGCTTGCAA
GGATAACAAAGATATCGTTATGCGTGAAGACTTGAAGAGTGTATTCCAAAAATTTGGTACTGTGAAGTTCATTGATTTCGCGATTGGAGC
AGAATCAGGATATATAAGGTTTGAAAGTGAAGGGGCTGCACAGAAAGCACGTGCTGCTGGAGTACTTGCTGAGGAAGGTGGTTTGGCAGT
GAAAAATTTCATTGCTGCCTTGGACCCTGTTACTGGTGATGCTGAGAGGGAATACTGGACTATGTTCCGTAATAGCCAGCAGGAAAAACG
CCGTGACTTTAAAGGGAATAGGGGAAGGGGAGGAAGGTTCAACAGAGGTGGAAAGCATTCGCGTGGAAGGGGAAACGATTTTGGTGGACG
CCCAAACAAATTCCAGAAAACTAGGTCATGAGGAATTCTATCTTTTGTACCATTTACGATGAATTCTCTCAACTTCTCTTGTTCCACATT
ACTACGATGATATACTTCCATCATCGTAATGTGTTGCAATTTTGTGCCTGAATTTATGTCACAATATCATAAAATAGTTATGTTTTACAT
TTTAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	273	Lupus_La_dom	57
2	24155	RNA_rec_mot	9
5	62136		3
1.1	101730	RNA-binding protein Lupus La	43
2	122240	Lupus La protein - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: RNA processing (GO:0006396) - Biological Process: RNA export from nucleus (GO:0006405) - Cellular Component: ribonucleoprotein complex (GO:0030529) RNA-binding protein Lupus La Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	5
5	133865	Lupus La protein - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: RNA processing (GO:0006396) - Biological Process: RNA export from nucleus (GO:0006405) - Cellular Component: ribonucleoprotein complex (GO:0030529) RNA-binding protein Lupus La Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U246387	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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