Sol Genomics Network

Unigene SGN-U272268

Unigene Basic Information

Unigene ID:	SGN-U272268
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272268
mRNA sequence:	Length: 1781 bp

>SGN-U272268 Solanum tuberosum #4 (9 members)
GAGATTTTACGTGCTCTTGTTGGGATAGTTTAGTACTTCTGTTGTAAAGCCTAAGCGGTGTAGTCGAGATGGTTCACTTTGTTTCGCTGG
GTTTCACAAAGCTTCTTCCCCGCTGATAAACCTCTCCTTCCAGCTCAGTCTCGCTAATCTCGGTGTTCATCCTTTGACGTCTAATACAGG
ATATACAGCCCACACACTTACAAAGATTAGGCCAACAGATATCTGGAGCCAGTCAAATATCCAAGGACGTTTCCCTTCACATTTACTTGA
AAATACTGAGGGGTTATGGCGAAGTAAGATTGGGTCAATAAAATCGTTATTTGTATCCAGAATGAGGAGAAGATTCCCAATTTTCAGTGT
TGTTCGTTTATATTGTACAGGGAATGCAGAGGTGCAGCCTCAATTGTCTATTGACCTCATTAAAATAATGGACCAAAGGTTATCAGCGAT
TGAGAACAGGAATGCTCACCTTGAGCGTTTTTTAGATCAGCCTGAATTGACACCTTCTGAATATTCAACGGCCAACAAAGAGCTCAGGAA
GCTCAGAGATTCAGTACATCTCATAAGTGAGTTAAGGGCAAAACAGAAGGAGATTAAGGAACTGAAATCAGTAATATCTGAATGTCAAGA
TGACAAAGACATGCAGCAGATGGCTTCTGAAGAATTGAGTGAAGCCACAGAAGGAGAGAAGAAATTTCAGTTTCTCCTTCTGAAGTCATT
ACTACCCAAAGATGATGCTGATGAGAGGGACTGCATTCTTGAAGTGAGGGCAGGAACTGGAGGGGAAGAGGCTTCTTTATTTGCGATGGA
CATATTTAAAATGTATGAAAAATATTCTGTGAAAAAAGGCTGGAAGTATGAGGTTCTAGAAATAGCTGAGTCTGATCTTAAAGGATACAA
GGAAGCTATTGCTTCTATCTCTGGAGTTGGTGTGTACGGGAAACTAAAATTTGAGAGTGGAATACACAGAGTTCAGCGGGTGCCCGTGAC
AGAGAAAGGTGGACGTGTTCACACCAGTGCTGTCTCTGTTGCAATTCTCCCGCAGGCAGATCAGCTAGATGTGAAGTTGAGGAATGAAGA
TTTGAGAATGGACACTTACAAATCAGGGGGATCAGGAGGTCAGCATGCAAACACCACAAACAGTGCTGTTAGAATCACTCACGTGCCATC
AGGAATAACTGTTTCCATACAAGATCAGCGCTCCCAGCATATGAACAAGGCCAAAGCACTAAAAATATTATGTGCAAAACTATATGAAAT
AGAGCGACTCAGCAGTCAGTCAAGTAGATCGAAACTTCGATTGGAGCAGATTGGCAGTGGGGACAGATCAGAGCGGATCCGCACCTATAA
CTTCCCTCAAGGACGGGTTACTGATCACCGTGTTGGCATCACAACGTATTCCATAGATGATGTTCTCCAGGGAGAAGATTTGGATGCTTT
TATTGATGCTCTCCTATTGCGGCAGGAAATGGACGCGATTGCATCATTCAGCTCCACGTAATGTTAGCTTAAAACAATATGAGTAGTTAC
CCTTTATTGATCACCCTTTGGTGGAGGGATTGTGCATTGATAAATTGTTGTTTCCATTGTGCTTGAAGCTGTTATAAGAGCAGCAGTTTT
TAACCTTTAAATACATTAGAATGGAGGGAAGAAGTTAATACGTTTTAGGTTAGGGAAGCTGAAAATAATGTAGTTGGTCGGACACAAGTC
AGTTTTTGTAGTGGATTTGGTAGGGATACAAGTCATTTTTATCAAATGTATTTTCCAGTAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	636	PrfB Pep_rel_factor_I	29
2	23882	PrfA PCRF PrfB Pep_rel_factor_I	10
5	58942	PrfA PCRF PrfB Pep_rel_factor_I	7
1.1	101977	Class I peptide chain release factor - Molecular Function: translation release factor activity (GO:0003747) - Biological Process: translational termination (GO:0006415) PCRF	26
2	120188	PCRF Protein chain release factor RF-1/RF-2 - Cellular Component: cytoplasm (GO:0005737) - Biological Process: translational termination (GO:0006415) - Molecular Function: translation release factor activity codon specific (GO:0016149) Peptide chain release factor 1 - Cellular Component: cytoplasm (GO:0005737) - Biological Process: translational termination (GO:0006415) - Molecular Function: translation release factor activity codon specific (GO:0016149) Class I peptide chain release factor - Molecular Function: translation release factor activity (GO:0003747) - Biological Process: translational termination (GO:0006415)	10
5	132580	PCRF Protein chain release factor RF-1/RF-2 - Cellular Component: cytoplasm (GO:0005737) - Biological Process: translational termination (GO:0006415) - Molecular Function: translation release factor activity codon specific (GO:0016149) Peptide chain release factor 1 - Cellular Component: cytoplasm (GO:0005737) - Biological Process: translational termination (GO:0006415) - Molecular Function: translation release factor activity codon specific (GO:0016149) Class I peptide chain release factor - Molecular Function: translation release factor activity (GO:0003747) - Biological Process: translational termination (GO:0006415)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U246186	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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