Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564009 in the current build, Tomato 200607 #2

Unigene SGN-U312305

Unigene Basic Information

Unigene ID:	SGN-U312305
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312305
mRNA sequence:	Length: 1636 bp

>SGN-U312305 Tomato 200607 #1 (51 members)
TCTTTACACTTTCAAACCTTCCTCCTCTAAAAAACCCTCTCTGTTTCTCAACTTTCTGCTGTGAAAATGCGTGAGATTCTTCACATTCAA
GGTGGCCAATGCGGTAACCAAATCGGATCCAAGTTCTGGGAAGTTGTGTGTGCGGAGCATGGGATTGATTCAACCGGAAGGTACCAGGGA
GACACAGATCTACAACTTGAGAGGGTGAATGTGTATTACAATGAAGCTAGTGGTGGACGGTTTGTTCCTAGGGCTGTGCTTATGGATCTG
GAACCAGGGACCATGGACAGTATCAGATCTGGGACTTATGGCCAGATCTTTCGTCCTGATAACTTTGTTTTTGGCCAATCTGGTGCTGGG
AACAACTGGGCTAAGGGTCATTACACTGAGGGTGCTGAGCTGATTGATTCTGTTCTCGATGTTGTGCGTAAAGAAGCTGAAAACTGTGAC
TGCCTTCAAGGGTTTCAGGTGTGCCACTCCCTGGGAGGAGGGACTGGGTCCGGAATGGGAACCCTTTTGATTTCAAAGATCAGAGAGGAG
TACCCAGATAGAATGATGCTTACCTTCTCTGTTTTCCCATCTCCAAAGGTTTCAGACACTGTTGTTGAGCCTTACAATGCCACACTATCT
GTTCATCAGCTTGTGGAGAATGCAGATGAGTGTATGGTTCTTGACAATGAGGCGCTGTATGACATTTGTTTCCGTACCCTCAAGCTGACA
ACTCCTAGCTTTGGTGACCTGAATCACCTGATATCTGCAACCATGTCTGGAGTAACTTGCTGCCTCAGATTTCCTGGCCAGCTTAACTCT
GATCTCAGAAAGCTTGCTGTAAATCTCATTCCTTTTCCCCGTCTTCACTTTTTCATGGTTGGGTTTGCACCACTTACATCACGAGGTTCC
CAACAATACCGGGCTTTGACTGTCCCTGAGTTAACTCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCTGCTGATCCTCGACATGGC
CGTTATTTGACAGCATCAGCTATGTTCCGTGGAAAGATGAGCACCAAGGAAGTTGATGAACAGATGCTTAACGTGCAGAACAAAAACTCT
TCTTACTTCATCGAGTGGATCCCCAACAATGTTAAGTCAACAGTCTGTGATATTCCTCCAACTGGTCTAAAGATGGCATCAACTTTCATT
GGAAACTCAACCTCCATTCAAGAAATGTTCCGTCGTGTTAGTGAACAATTCACGGCCATGTTTAGGAGGAAGGCTTTCTTGCACTGGTAC
ACTGGTGAAGGAATGGACGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAATGATTTGGTCTCTGAATATCAGCAGTATCAAGATGCA
GTGGCAGATGAGGAAGAGTATGAGGATGAGGAGGAAGACGATCCATACCGTGACTGATGTGATCATGCTGTGTAATTTTACTTGAATTGA
TATTTGTAGTAGTTTCTTTCCAGTTGTGGTTGTAACCTCAACTACCATCTACCCGAACCCATCCATGAACATGAACATTTATTTGTAGTT
GTCTTTAACTGCAAACACAGTTCCTTCAAATATTAGCTTTGTATTGGATTACCTACCTTGAAATATTACTACTTGCAGATTGAATGTTAA
AAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (51)

Alignment image suppressed for unigene with 51 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 0 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	128984	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	81

Preceding Unigenes (1)

Unigene	Build
SGN-U212624	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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