Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578451 and SGN-U593605 in the current build, Tomato 200607 #2

Unigene SGN-U312374

Unigene Basic Information

Unigene ID:	SGN-U312374
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312374
mRNA sequence:	Length: 1021 bp

>SGN-U312374 Tomato 200607 #1 (142 members)
GGCGATTGGCGGCCAATCGGCCGAATTGGTTTCTATATAGACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCT
ATGGGGAGAAGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAG
ATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTC
TCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGG
GTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGT
AAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAG
GCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGGGATTCACCAAGTTCAGCCGAACTGAT
TATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAA
CCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAAT
GGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAA
ATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACAAAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTA
ATTATTTCCGAGTAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	10
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	13
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	9
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	6
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	14
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (142)

Alignment image suppressed for unigene with 142 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101635	Ribosomal protein L10E - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Peptidase M17 leucyl aminopeptidase C-terminal - Molecular Function: aminopeptidase activity (GO:0004177) - Cellular Component: intracellular (GO:0005622) - Biological Process: proteolysis (GO:0006508) Lg106-like Peptidase M17 leucyl aminopeptidase N-terminal - Molecular Function: aminopeptidase activity (GO:0004177) - Cellular Component: intracellular (GO:0005622) - Biological Process: proteolysis (GO:0006508)	54
2	118642	Peptidase M17 leucyl aminopeptidase C-terminal - Molecular Function: aminopeptidase activity (GO:0004177) - Cellular Component: intracellular (GO:0005622) - Biological Process: proteolysis (GO:0006508) Peptidase M17 leucyl aminopeptidase N-terminal - Molecular Function: aminopeptidase activity (GO:0004177) - Cellular Component: intracellular (GO:0005622) - Biological Process: proteolysis (GO:0006508) Ribosomal protein L10E - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	40
5	129107	Peptidase M17 leucyl aminopeptidase C-terminal - Molecular Function: aminopeptidase activity (GO:0004177) - Cellular Component: intracellular (GO:0005622) - Biological Process: proteolysis (GO:0006508) Peptidase M17 leucyl aminopeptidase N-terminal - Molecular Function: aminopeptidase activity (GO:0004177) - Cellular Component: intracellular (GO:0005622) - Biological Process: proteolysis (GO:0006508) Ribosomal protein L10E - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	40

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U212651	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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