Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577757 and SGN-U579947 in the current build, Tomato 200607 #2

Unigene SGN-U312808

Unigene Basic Information

Unigene ID:	SGN-U312808
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312808
mRNA sequence:	Length: 2439 bp

>SGN-U312808 Tomato 200607 #1 (148 members)
AAAAATTGCAGAGTTGTGAGGACAAGTAGGAGAGAGGAAGATAAAGAGCAGTACTTTTTGAGCAGATCTATCACAAACAATCTCTTCTCT
CTCACTCTGCCCAAAACTCAGCCATGTTCTCCTTGAATGGCACCAGTTTTACGAACAATTCGTTATCTGGGGTTTCAAGATGTTTGAATC
AGTCAAGCAGAAGAGTTTCAGCTCCTATGGTGGTGGTAGCCGCCGTGAACTCAAACGGAAAACCTGGAGATGGAAGTGTTAGTGTATTGG
TTGAGAATGCTTTGACGGAAAGTCCTGCACCGGTTGAGATGGAGGTTAAATCTACTGTTACTGGTGGAGTTCAAGACGTTTATGGTGAGG
ATAGTGCCACAGAAGATCAATCCATCACACCTTGGACCTTATCTGTTGCTAGTGGTTTCTCATTGTTGCGTAACCCACACTACAATAAGG
GCCTTGCTTTCTCTGAGAGAGAGAGAGACACCCACTATTTGCGTGGTCTTCTTCCTCCTGTCGTAATTAGTCATGACCTTCAGGTCAAGA
AAATGATGAACAGCATCCGTAAGTATGATGTACCACTTCAAAGATACATGGCCATGATGGATCTTCAGGAAATGAATGAGCGGCTATTCT
ACAAGCTTCTTATTGACAATGTTGAGGAGCTTCTTCCGATAGTTTACACTCCAACTGTTGGTGAAGCATGCCAGAAATATGGTAGCATCT
TCAGGCGTCCTCAAGGTCTTTTTATCAGCTTGAAAGAAAAAGGCAAAATTCACGAGGTATTAAAAAATTGGCCCGAGAAGAAAATTCAAG
TTATTGTTGTTACTGATGGAGAACGAATTCTGGGCCTTGGGGACCTTGGTTGCCAGGGAATGGGGATACCAGTGGGCAAGCTCTCTTTAT
ACACTGCTCTGGGAGGCATTCGTCCTTCAGCTTGTTTGCCCGTTACCATTGATGTGGGTACAAACAATGAAAATTTGTTGAACGATGAAT
TCTACATTGGACTCAGGCAAAGAAGAGCTACCGGACAGGAATATTCTGAACTTTTAGATGAATTTATGTATGCCGTCAAGCAGAATTATG
GGGAGAAAGTGCTCATTCAGTTTGAAGACTTTGCAAATCATAATGCATTTGACCTCCTTGCAAAGTATGGAACTAGCCACCTTGTTTTCA
ATGATGACATACAGGGGACAGCATCCGTGGTCCTTGCTGGGCTGATGGCCGCATTAAACTTGGTTGGAGGAAGCTTGTCTGAACATACAT
TCTTATTCCTTGGAGCAGGAGAGGCTGGCACAGGTATAGCTGAACTCATAGCTCTTGAGATGTCAAAGCAGACTGGAATCCCTCTAGAAG
AGACTCGCAAGAAAATTTGGATGGTGGATTCTAAGGGGCTAATTGTTAAGTCTCGCATGGAGATGCTTCAACATTTCAAGAGGCCCTGGG
CACATGACCACGAACCAGTACAAGAACTAGTGAATGCCGTGAAGTCAATTAAGCCTACGGTCTTGATTGGATCTTCTGGAGCTGGGAGAA
CGTTTACTAAAGAAGTTGTACAAGCTATGGCAACCTTCAATGAGAAACCAATTATTTTTGCCCTCTCCAATCCAACATCACAGTCTGAAT
GTACTGCTGAGGAGGCTTATAGCTGGAGTGAGGGGCGAGCCATTTTTGCTAGTGGGAGTCCATTTGCTCCAGTTGAGTACAATGGGAAGG
TCTATGCGTCTGGCCAGGCAAATAATGCATATATTTTCCCTGGGTTTGGTCTAGGACTGATAATCTCTGGTGCAATTCGTGTCCACGATG
ACATGCTCCTGGTAGCCTCGGAAGCTTTAGCGGAGCAAGTTTCTCAAGAGAACTTTGAAAAGGGACTCATATACCCGCCATTTTCCAACA
TAAGAAAGATTTCAGCGCATATTGCTGCCAAAGTGGCAGCTAAAGCATATGAATTAGGTTTGGCCACTCGTCTACCGCAGCCCAAGGACC
TAGTCGCATATGCAGAGAGCTGCATGTACAGCCCAGCATACCGCAGCTATCGTTGAGTCAGAGAAGATATTGTTGCTTCAAAATTAGTCA
CTGTTCCTTCCAGTGTTAGTTAGTTATTGATGTCATTCCTTTCTCCTTTTAGTTGGTTTGCTCTTAAAATTTAAGAAAATACGGTAGCTT
GCAGATATGGTGTACTCGTGAAATATTTGATTATGTTAAGAGTTAAATGTAGGGAACTTTGCAGCATCAAATATTAGTAGATTATTGTGG
AGAAGAAGAAAAATAACCAAAATGTCTTTTGATACTTTGGTGTCTTATATAATTAAGGTGGAATGAGAAAAATGTCAGTTAACAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTCCGGGGGGGGGGGGCGGGCCCCCCTCCCCCCCT
AAGGGGGGG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
me1	NADP-malic enzyme

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	16
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	26
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	8
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	10
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	6

mRNA member sequences (148)

Alignment image suppressed for unigene with 148 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101519	Phosphoribulokinase/uridine kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: biosynthesis (GO:0009058) - Molecular Function: kinase activity (GO:0016301)	89
2	118683	Malic enzyme NAD-binding - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Malic enzyme N-terminal - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) Malic oxidoreductase - Molecular Function: malic enzyme activity (GO:0004470) - Biological Process: malate metabolism (GO:0006108)	36
5	129173	Malic enzyme NAD-binding - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Malic enzyme N-terminal - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) Malic oxidoreductase - Molecular Function: malic enzyme activity (GO:0004470) - Biological Process: malate metabolism (GO:0006108)	34

Preceding Unigenes (1)

Unigene	Build
SGN-U213228	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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