Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570903 in the current build, Tomato 200607 #2

Unigene SGN-U313117

Unigene Basic Information

Unigene ID:	SGN-U313117
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313117
mRNA sequence:	Length: 1685 bp

>SGN-U313117 Tomato 200607 #1 (103 members)
GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTAAATTTCTGGCTTTATCTTTCTATAATTTTTCAA
AAAAGCTTCAAGGAATGGCCAAGACTAATGGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGATGATTGATATGGGAC
CTTTAGTTATAGATAAAGCGGAGGGTTCTTATGTCTATGACGTAAATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAG
TATTAGGGGGGAGTGAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATTTTGGAATCGTACCA
CAAAGCCTTCTTTGGATCTTGCAAAGGAGCTCATAAATATGTTTACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAG
AAGCTAATGACACTCAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTATTTCTCGAAAAAATG
CATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGCTTCCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTC
ACACTGATTGCCCTCATTATTGGAACTATCACTTGCCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAATAATTTGGAAAATC
TTATACTCAAAGAGGGTCCTGAAACAGTTGCTGCTTTCATTGCGGAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTT
ATTTCGAAAAGATTCAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGGAAGACTTGGGACAA
TGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTATAGCAAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGC
TTGTAAGTGAAGAAATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGTTTTTTGCCATGGATTTACTTATTCTGGACATCCTG
TTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGGAAAAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAG
AAGGTTTGAAAGCATTTATAGACAGTCCAATAATTGGAGAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTTTGTAGATAACAAAT
CTCCTAATGATCCTTTTCCACCAGAATGGGGTGTTGGTACATATTTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTG
GTGATCATGTAAATATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGATGATAAGCATATATGGGAAAGCATTGAAGGATA
CTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATCTCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTG
TAGTTTTTTTTTTTTTTTTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGAGCAACATTTGAAT
AAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
virp2	viroid RNA-binding protein

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	22
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	16
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (103)

Alignment image suppressed for unigene with 103 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101610	Aminotransferase class-III - Molecular Function: transaminase activity (GO:0008483) - Molecular Function: pyridoxal phosphate binding (GO:0030170)	60
2	119140	Aminotransferase class-III - Molecular Function: transaminase activity (GO:0008483) - Molecular Function: pyridoxal phosphate binding (GO:0030170)	20
5	129552	Aminotransferase class-III - Molecular Function: transaminase activity (GO:0008483) - Molecular Function: pyridoxal phosphate binding (GO:0030170)	19

Preceding Unigenes (2)

Unigene	Build
SGN-U213220	Lycopersicon Combined #3
SGN-U213221	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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