Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U573205 in the current build, Tomato 200607 #2

Unigene SGN-U313159

Unigene Basic Information

Unigene ID:	SGN-U313159
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313159
mRNA sequence:	Length: 1596 bp

>SGN-U313159 Tomato 200607 #1 (80 members)
GCAGTGACCAATACACTGATGCCAAAACTTCTTCTTCTTCTTCACTGAAATGGCTTCACTATTGGGAACTTCTTCTTCTTCTTCTGCAGC
AGCAATTTTAGCTTCTACACCCTTCACTTCTCGTTCCTCTAAGTCTGCTGCTTTATCCCTTTTCCCATCTTCAGGACATAGCCAAGGGAG
GAAGTTTTATGGAGGAATTAGACTCCCAGTTAAGAAAGGGAGGTCCCAATTCCATGTGGCAATTTCCAATGTTGCAACTGAAATCAGCCC
TGCTCAAGAACAGGCTCAGAAACTTGCTGAAGACAGCCAGAGACCGGTGTATCCATTTCCCGCCATAGTGGGGCAAGATGAGATGAAGTT
GTGTCTTTTGCTGAATGTAATAGATCCAAAGATTGGAGGCGTGATGATTATGGGTGATAGAGGAACTGGGAAGTCCACCACGGTTAGGTC
TTTGGTGGATTTACTTCCAGAAATAAAAGTTATTTCTGGTGATCCATTTAATTCAGATCCAGATGACCAAGAAGTAATGAGCGCTGAAGT
CCGTGACAAATTGAGGAAGGGAGAGCAGCTTCCTGTGTCTCTCACCAAAATCAACATGGTTGATTTACCACTAGGTGCTACTGAGGACAG
GGTGTGTGGGACAATCGACATTGAGAAAGCTCTTACCGAGGGTGTGAAGGCATTCGAGCCTGGTCTTCTTGCTAAAGCTAACAGAGGAAT
ACTTTATGTCGACGAGGTTAATCTTTTGGACGACCATTTAGTAGATGTTCTTTTGGATTCTGCAGCATCAGGATGGAACACTGTTGAAAG
AGAGGGAATATCAATTTCACACCCTGCTCGATTTATCCTTATTGGTTCAGGTAATCCTGAAGAAGGAGAACTTAGGCCACAGCTTCTTGA
TCGATTTGGAATGCATGCCCAAGTCGGGACTGTGAGAGATGCAGAACTAAGAGTGAAGATCGTCGAGGAAAGAGGTCGTTTTGACAAGAA
CCCCAAGGAATTCCGGGAATCATACAAGGGGGAGCAAGAAAAGCTCCAGAGCCAAATCACCTCAGCCAGGAGCGGGCTTTCTTCTGTTAC
GATTGATCATGATCTCCGCGTTAAAATCTCTAAGGTCTGTGCAGAACTGAATGTCGATGGATTGAGAGGTGATATAGTCACTAACAGAGC
AGCAAGAGCATTGGCTGCACTTAAAGGAAGAGATAAGGTAACCCCAGAAGATATCGCCACTGTCATTCCCAACTGCTTAAGACACAGACT
TAGGAAGGATCCGTTGGAATCTATCGACTCAGGTTTACTTGTTGTTGAGAAATTTTACGAGGTTTTTGGCTAAGGAGACAAATAGCTTTC
TTCTTTGGGTAAACATTTCCCTGCACCAAGCTGTTTTATAGAGCAACATACTTGTTTTTGTCTTAATTTTCCATTTCTCAAATCATCTAA
AGATTTGACCATTGTCAAAACTGAAGATTGTCTGTGTACTGTGCTTAAGAAATGTGTTCAGATTCACCTGTACTTAAACTTACTGGTCTT
TGATTGTTATCAATCTTTGGCCTAAGGTTCCCAATGTTGTATCTCTGGCCTCGCCTCGTTTGGTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	22
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (80)

Alignment image suppressed for unigene with 80 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102116	Magnesium chelatase ChlI subunit - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium chelatase activity (GO:0016851) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	21
2	120041	Magnesium chelatase ATPase subunit I - Molecular Function: ATP binding (GO:0005524) - Biological Process: porphyrin biosynthesis (GO:0006779) - Molecular Function: magnesium chelatase activity (GO:0016851) Magnesium chelatase ChlI subunit - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium chelatase activity (GO:0016851) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	11
5	131046	Magnesium chelatase ATPase subunit I - Molecular Function: ATP binding (GO:0005524) - Biological Process: porphyrin biosynthesis (GO:0006779) - Molecular Function: magnesium chelatase activity (GO:0016851) Magnesium chelatase ChlI subunit - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium chelatase activity (GO:0016851) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U213981	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: