Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U582594 in the current build, Tomato 200607 #2

Unigene SGN-U313295

Unigene Basic Information

Unigene ID:	SGN-U313295
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313295
mRNA sequence:	Length: 1330 bp

>SGN-U313295 Tomato 200607 #1 (99 members)
GGCGATTGGCGGCCAAATCGGCCGAATTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCG
CCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCC
AATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGT
CCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGA
CGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTC
TGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGA
ACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCAC
TGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGA
TGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGG
CTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAG
CAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTCAT
ATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACG
TTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCAT
TATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAA
TCTTCAAAAAAAAAAAAAAAAAAGAGTTTCTTGCTTGTTGTTTACCTCCAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
arca1	LeArcA1 protein containing 7 WD40 repeats

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	7
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (99)

Alignment image suppressed for unigene with 99 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101368	WD-40 repeat	806
2	118510	WD-40 repeat	72
5	129797	WD-40 repeat	15

Preceding Unigenes (1)

Unigene	Build
SGN-U213506	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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