Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U570561 and SGN-U570562 in the current build, Tomato 200607 #2

Unigene SGN-U313420

Unigene Basic Information

Unigene ID:	SGN-U313420
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313420
mRNA sequence:	Length: 1678 bp

>SGN-U313420 Tomato 200607 #1 (91 members)
GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAG
TGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGAT
GCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGT
TGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAG
TTATCTCTCCACTTGTTTCTATCACACCGGCGAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGG
ATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCG
TATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGAC
GGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAA
GGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCAT
GAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGA
CCCCAATAATACAACTATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATT
GGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAA
TGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGTCCGATCAGGCTCAATGGGGTGGAAG
TGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTA
TTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTT
CAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGG
GACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTA
GACTCTGTTAAGTTTTTTCTTAAAAAACAGCCCGGGGGATCCAAAAAAAAAAAAAAAAAACATTTGGTTTGCTTGTGAGCAGCATCTAGT
AAATGTGATGCTTATAATTGACGAAACAAAGATGGTAGAGAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	cTSD	seed	1504	9

mRNA member sequences (91)

Alignment image suppressed for unigene with 91 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118541	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	59
5	129074	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	47

Preceding Unigenes (1)

Unigene	Build
SGN-U213456	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: