Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Unigene SGN-U570562

Unigene Basic Information

Unigene ID:	SGN-U570562
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1676 bp

>SGN-U570562 Tomato 200607 #2 (107 members)
GGCNTTACNGCCGGGGANCTTATCTTCGTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGA
TTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCC
GACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCC
ATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGG
GGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGCTTGTTTCTGCTAAGGTCATCAGGAACAA
GCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTT
GATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATT
TGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGT
AACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAA
TGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGCTACCTACCAAAA
TCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCG
ACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGAGCTTC
TGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACA
GTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGC
TCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGTGAAGTTTAATTATTTT
CAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGAT
AAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACAT
TCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTT
GTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATGGTAGAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc07g064510	Solyc07g064510

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	10
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	4
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSC	seed	2256	4
Solanum lycopersicum	cTSD	seed	1504	9

mRNA member sequences (107)

Alignment image suppressed for unigene with 107 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U313420	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: