Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578388 in the current build, Tomato 200607 #2

Unigene SGN-U313435

Unigene Basic Information

Unigene ID:	SGN-U313435
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313435
mRNA sequence:	Length: 2070 bp

>SGN-U313435 Tomato 200607 #1 (74 members)
ATTTATTCGGAAATAAAAAAAAATGTTGGTCTGTATTTGAGGGTTGGAAAGAGTAGTATATAAATGTTATACGAAGGTCTCTCTCTCAAC
GCACAACTTCACTCATTTCTTTCTCGAATCACTCTCTTTCTCCCTCTTCCCGAACTTGTAGGATTTCCTGTCAAACATTCTCCTCGCCGG
AGAAGGAAATAAACGTCGTCGGTGTTCAGGTTGATTGAAGGTTCTACGTTTGATCCGTTCAATTCTTTTGGCTCCAAGTTGTAGTTGAAA
CAAATCGGAAATGGCTTCTCAACCGAAGAATGTTGGAATTCTCGCTATGGAGATTTACTTTCCTCCTACTTGTCTTCAGCAGGAAGTATT
GGAGGCTCATGATGGAGCAAGCAAAGGCAAGTATACAATTGGTCTTGGACAAGATTGCATGGGCTTTTGCACTGAGGTTGAAGATGTTAT
ATCAATGAGTTTGACAGCTGTGAATTCCCTACTGGAGAAGTATTCTGTTGATCCAAAGCAAATTGGTCGACTAGAGGTTGGAAGTGAAAC
TGTTATTGATAAGAGCAAATCTATCAAGACATTCTTAATGGAAATATTTGAGAAACATGGAAATACTGACATTGAAGGAGTTGACTCAAC
TAATGCCTGTTATGGGGGAACTGCTGCATTGTTCAACTGTGTAAATTGGGTGGAGAGTGCTTCATGGGATGGACGCTATGGTCTTGTAGT
ATGCACGGATAGCGCGGTCTATGCGGAGGGGCCTGCTCGGCCTACTGGAGGAGCTGCAGCCATTGCTATGCTTGTTGGGCCTGATGCTCC
TATAGTATTTGAAAGCAAGATCAGGGCTAGCCATATGTCCCATGTCTATGATTTTTACAAGCCCATCCTTGACAGTGAATATCCAGTGGT
TGATGGTAAGCTTTCACAAACCTGTTATCTAATGGCACTTGATGCTTGCTACAAGAGTTTATGCAACAAATATGAGAAATTGGAAGGCAA
GCAATTTTCAATGTCGGATGCAGCCTACTTTGTGTTCCATTCACCATACAACAAGCTTGTGCAGAAGAGCTTTAGTCGGTTGCTGTTCAA
TGATTTTCTAAGGAATGCTAGCTCTATTGATGAGTCTGCCAAAAAAATCCTGGCCCCCTTTGAATCCTTGACCGGTGATGAAAGCTACCA
GAGCCGTGATCTTGAGAAGGCATCCCAACAACTTGCTAAACCACTTTATGATGAGAAGGTGCAACCTACCACATTGATACCAAAACAAGT
TGGCAACATGTACACCGCATCTCTTTATGCTGCTTTTGCATCCCTCCTTCACAATAAGCATAACACATTGGCTGGTCAGCGGGTAATCAT
GTTTTCTTATGGGAGTGGATTGACTGCAACTATGTTTTCGCTAAAGTTTAACGAAGGTCAACATCCTTTTAGTTTGTCAAACATTGCAAG
CGTGATGAATGTCACAGAGAAGTTAGAATCGAGACATGAGTTCACTCCTGAAAAATTCATCGAAATATTAAAACTAATGGAGCATAGATA
TGGTGCCAAGGACTTCGTGACCAGCAAGGATTGCAGCCTTCTTGCACCAGGAACCTACTACCTAACAGAAGTTGATTCCAAGTACAGAAG
ATTTTATGCAAAGAAGGCTCAGGAGAATGGGCTGGTCAACGGACACTAGGACAGCAAACACGGTCCTTGTTGCACGGTGTAAGGCCATAT
AGTAGGCGACTCGTGCTGTTTAAGTTATTGTTAGCGCATAGAAGAATAACTAGTGCTCTGGCAGATTCGATTGTTATTACATGTAGTTTC
TTTCCAGAGTAGTAGATGTAGATCCTATGCCTTTTTTCTTTCTTTTTTCAGTTCCTGACGAGTTCTAATGTTGTGCATCTCCTCTGTCTT
CACCTGTATGTGAAATGATTGTAAAAGTCGTCAACCTAGTCTTTTGTTGAAATTCATTTCTCATCTACAATAAACTGATGTATTTATGAG
AAAGATCATTTAAATGGGTGATTGCTGAAATTTGTGAAAAAAAAAAAAAAAAAAACTTATCTTCATTTTCTAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	6
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	12
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	9

mRNA member sequences (74)

Alignment image suppressed for unigene with 74 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102217	Hydroxymethylglutaryl-coenzyme A synthase C terminal Hydroxymethylglutaryl-coenzyme A synthase N-terminal Hydroxymethylglutaryl-CoA synthase - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase active site - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084)	19
2	119206	Hydroxymethylglutaryl-coenzyme A synthase active site - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase N-terminal Hydroxymethylglutaryl-CoA synthase - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase C terminal	19
5	129619	Hydroxymethylglutaryl-coenzyme A synthase active site - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase N-terminal Hydroxymethylglutaryl-CoA synthase - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase C terminal	18

Preceding Unigenes (1)

Unigene	Build
SGN-U213560	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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