Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U569037 and SGN-U569038 in the current build, Tomato 200607 #2

Unigene SGN-U313441

Unigene Basic Information

Unigene ID:	SGN-U313441
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313441
mRNA sequence:	Length: 2409 bp

>SGN-U313441 Tomato 200607 #1 (86 members)
GCAAATATCTCTCTTTTCCATTTCTAACTCTTTCTCACTCTCTCTCTAGATTTTGACGAAATTCAAGCTCGAATCTCAGGCGAACGGCGG
CAAAATTTCCACCGCTCTAACAGAATCTTGAGAGGATGGCAATGGTAGATGAGCCATTGTACCCGATAGCTGTGTTAATAGATGAACTTA
AGAATGATGATATCCAATTGCGGTTGAATTCTATTAGGAGGTTATCAACTATTGCGCGTGCACTCGGTGAGGAAAGAACCAGAAAGGAGT
TGATCCCTTTTTTGAGTGAAAACAATGACGACGATGATGAAGTGTTGCTGGCAATGGCAGAAGAGTTGGGCGTGTTTATTCCTTATGTTG
GAGGTGTGGAGCATGCTCATGTTCTTCTCCCACCTCTAGAGACCCTTTGTACAGTTGAGGAGACCTGTGTGAGGGATAAAGCTGTGGAGT
CATTGTGTAGAATTGGATCCCAGATGAGGGAGAGTGATTTAGTTGATTGGTTCGTCCCACTTGTGAAGAGGCTAGCAGCTGGTGAATGGT
TCACAGCAAGGGTTTCTGCATGTGGGCTCTTTCATATTGCTTACTCAAGTGCCCCAGAAATGTTGAAAGCAGAGCTTCGGTCTATTTACA
GCCAATTGTGTCAAGACGACATGCCTATGGTGCGAAGGTCGGCTGCTACAAACTTGGGGAAGTTTGCTGCTACAGTTGAATCTGCTTACC
TGAAGAGTGACATCATGTCAATATTTGATGATCTTACCCAGGATGATCAGGATTCTGTGCGCCTATTAGCTGTTGAGGGCTGTGCTGCAC
TTGGTAAGCTGTTGGAGCCCCAGGACTGTGTGGCACATATCCTGCCTGTCATTGTCAACTTCTCTCAGGACAAGTCTTGGCGCGTTCGAT
ACATGGTTGCTAACCAGCTGTACGAACTATGTGAAGCTGTTGGGCCAGAGCCCACTAGGACGGATTTGGTGCCTGCCTATGTCCGTTTGC
TTCGAGATAATGAAGCTGAAGTTCGCATAGCTGCTGCAGGAAAAGTAACCAAATTCTGCAGAATTCTTAGTCCCGAGCTTGCGATTCAGC
ATATTCTTCCCTGTGTGAAGGAATTATCATCAGACTCTTCACAACATGTCAGATCTGCTTTGGCTTCCGTTATAATGGGGATGGCTCCTG
TTTTGGGAAAGGATGCAACCATTGAACATCTTCTTCCAATATTTCTTTCCCTTCTGAAGGATGAGTTTCCCGATGTGCGCCTGAACATCA
TCAGCAAGCTTGATCAAGTCAATCAGGTGATTGGAATTGATTTATTGTCCCAATCTCTGTTGCCAGCTATTGTTGAGCTGGCAGAGGACA
GGCATTGGCGAGTCCGTCTTGCAATAATAGAATACATACCTCTATTGGCAAGTCAATTGGGCATAGGATTTTTTGATGATAAGCTGGGTG
CTCTTTGCATGCAATGGTTACAGGACAAGGTTTATTCAATTAGAGATGCTGCTGCTAATAACTTGAAGCGTCTTGCAGAAGAATTTGGTC
CAGAGTGGGCAATGCAGCATATAATTCCTCAGGTCTTGGATATGACTACCAGTCCACATTATTTGTATCGAATGACTATTCTTAGATCAA
TTTCATTGCTTGCACCAGTAATGGGCTCTGAGATAACTTGTTCTAAGTTGCTACCTGTGGTTGTTACTGCTACAAAGGATAGAGTGCCCA
ACATTAAATTTAATGTGGCAAAGGTGTTGCAATCCCTTGTACCTATTGTTGACAACTCGGTGGTGGAGAAAACCATTCGGCCCAGTTTAG
TAGAGCTAGCCGAAGACCCTGATGTCGATGTTCGCTTTTATGCCAATCAAGCACTCCAGTCGATCGATAATGTCATGATGTCAGGTTAGA
GAAGCTAAACATTGTCAGGTGAGAGTAGTACAAATCTCTCTTCTAATCCCTCTTCAGTAGTCTTGGATTATGCTCTCACACGAAGAAGCA
AAAGGGGAAAGGTACAATGTAAAATGCATCGTGTTGAGCTTGGTGTCGTATATTGTTGTTACTAATTCTTTTGTAGGATTCGGCATTCAA
GATGCTGTGACACTAATGAAGACCTGAGTGTTTTTTCATGTAAAGCTGCTGCCATACTTTACTATTTGGATCTGCTAAGCTCAATTTGTA
TTTGTTTTTGTTAGTCTACTTTTGAGGTTTGAAACTACAACAATTTAGCTGTGTTACTCTAAGCAAATTTGTCGTTATATTAGTGTTTGC
GTTTCTTAGCTTAAAAAAAAAAAAAAAAAAAACCCCCTCCCCCCATCCCATCTCGTTGTAATTTCTACTTTACGTCGTTTACTATATTTT
CTTAGACCCACAAATATGTGGGATGGGTTTTAAGTACTTACCTTGGTTTACATCGAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	13
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	6
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	cTOS	suspension cultures	8026	7
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (86)

Alignment image suppressed for unigene with 86 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (11)

Annotations (manual: 6 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101812	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	35
2	119295	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	17
5	129704	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	16

Preceding Unigenes (1)

Unigene	Build
SGN-U213418	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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