Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U575256 in the current build, Tomato 200607 #2

Unigene SGN-U313725

Unigene Basic Information

Unigene ID:	SGN-U313725
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313725
mRNA sequence:	Length: 2110 bp

>SGN-U313725 Tomato 200607 #1 (68 members)
AAAAATAGAACGTTGAAATTAGGACCAATGTCACGGATATAAAACCCCCACCAATCCGATCCAATTTCTCCACAACTCTCCCTTAAATTT
CTTCATCCAAAATGACACGTGTTGAAGATTTTTTCAGCAAACAAATCGATTTTTGTAAAAGGAAGAAAAAAATCTACTTGGCCATTGTTG
CCTCAGTCCTGCTGGTTGCTGCAGTAATCGGAGTAGTCGCCGGAGTAAAATCTCATTCGAAAAACTCCGACGATCATGCAGACATAATGG
CCATTTCGTCTTCAGCCCATGCTATTGTAAAATCTGCGTGTAGCAACACTCTACACCCCGAACTGTGTTACTCTGCGATTGTCAATGTTT
CTGATTTCTCAAAAAAAGTAACAAGCCAAAAAGATGTGATTGAATTGTCCTTGAATATCACTGTCAAAGCCGTTCGACGCAACTACTATG
CAGTCAAGGAACTCATCAAAACTAGAAAAGGTTTAACCCCACGAGAAAAGGTTGCGCTGCATGACTGCCTGGAGACGATGGACGAGACAC
TCGACGAGCTCCACACTGCTGTAGAAGATCTGGAGCTATATCCCAACAAAAAATCATTGAAAGAACACGCGGAAGACCTGAAAACTCTAA
TAAGTTCCGCAATTACAAACCAGGAAACTTGCCTCGACGGTTTCTCTCACGATGAGGCCGATAAAAAGGTACGCAAGGTTTTGTTGAAAG
GCCAAAAGCACGTGGAAAAAATGTGCAGCAATGCTTTAGCTATGATCTGTAACATGACCGATACCGACATTGCAAATGAGATGAAATTAT
CGGCCCCCGCCAATAATAGGAAGTTAGTAGAGGATAACGGCGAGTGGCCGGAGTGGTTGTCCGCCGGCGACAGGAGGTTATTGCAGTCGT
CGACGGTGACGCCAGATGTGGTTGTGGCGGCCGACGGAAGCGGAGATTACAAAACGGTGTCAGAGGCGGTAGCAAAAGCGCCAGAGAAGA
GTAGCAAGAGGTATGTGATTAGGATAAAAGCTGGTGTTTACAGGGAAAACGTGGATGTGCCAAAGAAGAAGACGAATATTATGTTTATGG
GAGATGGCAAAAGCAATACAATAATCACAGCAAGTAGGAATGTGCAAGATGGTAGCACTACCTTCCACTCTGCTACAGTTGCCGCGGTGG
GGGAAAAGTTCTTGGCCCGGGATATAACCTTCCAAAACACAGCAGGAGCCTCGAAGCATCAAGCCGTGGCACTTCGCGTGGGCTCTGATT
TGTCCGCATTTTATAGATGTGACATGTTGGCTTATCAGGACACCCTCTACGTCCACTCTAATCGTCAATTCTTTGTACAATGTTTAGTCG
CTGGTACCGTTGATTTTATATTCGGGAATGGTGCTGCTGTTTTTCAAGACTGTGATATTCACGCCAGGCGTCCTGGTTCGGGCCAGAAGA
ACATGGTTACTGCTCAAGGAAGAACTGACCCTAACCAGAATACTGGTATTGTTATCCAGAAATGTAGAATTGGTGCAACGTCTGATTTGA
GACCGGTGCAGAAGAGTTTCCCTACATATCTAGGAAGGCCGTGGAAAGAATATTCGAGGACAGTGATCATGCAATCGTCGATTACTGATG
TGATCCAGCCTGCTGGATGGCATGAATGGAATGGGAATTTTGCATTGGATACTCTGTTTTATGGGGAGTATGCAAATACAGGGGCAGGAG
CACCGACGTCAGGAAGAGTTAAATGGAAAGGGCACAAGGTAATTACAAGTTCAACTGAGGCCCAAGCTTATACTCCTGGCAGGTTCATTG
CTGGAGGTAGTTGGTTGAGCTCCACAGGCTTCCCTTTTTCTCTTGGTCTTTAAAACTAAAAATAAACACGAGCGAGTTTCAATTATTTGG
AGACCTAAGTGTGCAGGGCCTTGGCATTTAAATAACAAGATCCTTTCACGAATTTCCCTGTCTTGTCAACTTCTATTCGTGCTGAGGAAT
TTTAAGTAATGTACATGTTAATATTAACTATTGTGTGCAATATTTATCTCATGCGAAAACCAAAAGAATATAAAAAAAAAAAATAGAATT
TCCAAAATTCTATATGCTTATACTTGGCCTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pmeu1	pectin methylesterase pmeu1	pectin methylesterase

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	9
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (68)

Alignment image suppressed for unigene with 68 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101397	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	298
2	118428	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	202
5	128937	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	194

Preceding Unigenes (1)

Unigene	Build
SGN-U213794	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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