Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570149 in the current build, Tomato 200607 #2

Unigene SGN-U314098

Unigene Basic Information

Unigene ID:	SGN-U314098
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314098
mRNA sequence:	Length: 1868 bp

>SGN-U314098 Tomato 200607 #1 (53 members)
TCGTGTCTTTCAGTCGTCTTCTTCTTTTTCCATCTCCGCCATTGCTGAAGGTTTTGGTTTTCTTTCCCTTTGTTTGTTTCATATTTTTCG
TCATTGTTTTACTTCTGTTAGAATCTTTAGATTTCCTTTCTTAATTTAAATTGCGTGTTGACCCGCAATCTTAGCTGCGCATGCACGTGT
CAAAATGCTATCTGTTGTATATTTTAAGAATGTTCTCCAACCAATCCTAAACCCTAATTCTTGTTCTCTTTAGAAAAATCAAAAACAGAT
TGATGGATAACAAAGAGGCTTCAGAAAAATCATCTTCCCAGAATATGGATAACCAAGAAGCTTCAGAAACTATTGATGCACTCTCATTGA
CAGCTTCCTCATCCAATCCTTCCATTTCAGCTTCACAGATGAGTTTGGAGGAAAAGTTCAAGATTGTTAGGAGTATTGGGGAGGAATGCA
TACAGGAGGATGAGTTGATGAATCTTTTGGCAAAGAAGCCACAACCTATTTGCTATGATGGTTTTGAGCCTTCTGGTCGAATGCACATTG
CTCAGGGAGTTTTGAAGGCACTAAATGTCAACAAACTGACTTCGGCTGGCTGCAAGGTGAAGATCTGGATTGCAGATTGGTTTGCCCAGC
TAAATAACAAGATGGGAGGTGATCTGAAGAAAATTGAGGTTGTTGGTCAATATTTGATTGAGATATGGAAGGCTGTTGGAATGAATCTTG
AAGGGGATCAAGTGGAATTTTTGTGGTCTTCAAAAGAGATTAACTCCAGAGCTCATGAGTACTGGCCTCTTGTTATGGACATAGCTCGAA
GGAACAAGCTTCCAAGGATTTTAAGGTGCTGCCAAATTATGGGTCGGTCTGAGCAAGATGAGTTGACTGCAGCCCAGATTTTTTACCCGT
GCATGCAATGTGCTGACATATTCTTCCTTAAGGCTGACATCTGTCAACTAGGCATGGACCAGCGAAAGGTTAATGTACTTGCAAGAGAGT
ACTGTGATGACATCAAGAGGAAAAACAAGCCTATCATATTGTCCCACCATATGCTCCCTGGTTTGCAGGAAGGTCAAGAGAAGATGTCCA
AGAGTGACCCCTCTTCTTCCATTTACATGGAGGATGAAGAGGCAGAAGTAAATGTCAAGATAAAGAAGGCTTTTTGTCCACCAAAGGTTG
TAGAAAAGAATCCATGTCTGGAGTACGTCAAGTATATCGTCCTCCCTTGGTTTAATGAGTTTAAAATTGAGCGAAGTGCTGAGAATGGTG
GTGACAGGACCTACACAAAATTTGAAGAATTAGCTGCTGACTATGAAAGTGGGAGTTTGCATCCTGCAGACCTGAAACCTGCACTATCAA
AAGCAGTCAATAAGATATTACAGCCGGTGCGTGATCATTTTAAGAACGACCAGAAAGCCAAAGACCTTATGAAAAGAGTGAAGAGCTACA
AGGTAACTAGGTGAGCTCTAGTTGAATGAGGTGTAAATGGATTGAGAGATGACAGTCTGGAAGTTCCACTCCATTTCTTGTCCGCTTTAG
TAACTTGGTTTCAAAAAAAATTTAAACACCATTTTTGATATATTATTGTGTTATTGAAATGCCCGAATCACATTTGTTTAAATTTTATCA
ACTGTAATTTCACCTACATGGTGATTTCCAGATAGTATTTTTATTCCTCTCCAAAGTCTGGCATATATCATCCATTTGATTGTACCTAAT
CATATATGATGATCTGCATTGTGTTTTAACTATGTCTTCTTTATCGGACAAAATTTGAAGAAGAAAAAAGAATGTATTCGCTAGACCTCC
TCTAGTTTTATGGGTATATTTTGTGTAATTCTATAAATGAAACTTGAATAAGATAATGTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102879	Aminoacyl-tRNA synthetase class Ib - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	9
2	120325	Aminoacyl-tRNA synthetase class Ib - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	9
5	130605	Aminoacyl-tRNA synthetase class Ib - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U213932	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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