Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579112, SGN-U579804, and SGN-U589853 in the current build, Tomato 200607 #2

Unigene SGN-U314655

Unigene Basic Information

Unigene ID:	SGN-U314655
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314655
mRNA sequence:	Length: 2233 bp

>SGN-U314655 Tomato 200607 #1 (88 members)
TTTTTTTTTTTTTTTTTAAACAAATTATTGGGTTACTATACACCTTATCGCAGCACTAAAGAGAACAAAAACGCACCAGAACAAAATTTA
TTTCAACAAAGCTGGAAAGAAAACACAGTATTATCACTCAAAAACACACATGAAGCTCTCATTTGACCTTTCCATAATGAATTCACAACA
ACCCAAACTATTCTGAAGCAGACCTTATAGGTTTACCCACAACAAAACGCCTACCGTGATTCCCAATCTTCTTTTTACAGCCATCAAGAG
AAACAGATAACTCATAAGGAGGTGCATCAGAAGCCAACCATTGATCCACATAGAATATGCTCTGACTACACTGCATATGAGGACCAGTGA
AAGTTGTCTCAACATAATCCAAGAACCATCCATGGTGATCTCCAGATCCATCAGAAGTAACATTAAGTCTGCAAATTGGTGTGCTAATAC
ATTTGCCTCTACCAGTGAAGATATCCACATTACCTCTTTCGTAGTAATCGTAATTTGGACCCATTAAACCCCACTTTTCAAGATCTGGAA
TCCATACTGATTTTCCAGAAGCATCGCCTAGTGTAACGCTGATTTTGGAGTCAGTTCCACCCTTTATGATTGAACCAGTTCGAACATACA
GAGTATACACACACTCTTCAGATGAACCAGCTGCAGCAATATGAGCTGTAAGGAAGAAAGTGAAAGCAACAGCAGTGATCGTATCGTTTT
GCCTCTCCGCCGAAACACAACACAGTTGGTGAAGGGTGAAACAAGTTTCAACTGTTGTGTGGCCATGGCTCTGATTTTGCATTCAACAGA
CAACAACAAAAATGCCTCAAAGGCACTCATTGCAGCTGAGTACACAGGTGTTAAGGTTGATCTTGCAAAGGACTTCCAGATGGGTGTATC
CAACAAGACACCTGAGTTTCTTGAGATGAATCCCATTGGAAAGGTTCCTGTGCTTCAAACACCTGATGGACCTGTTTTTGAGAGCAATGC
CATTGCGCGTTATGTTACCAAAACAAAGCCCAACAATCCTCTTTTTGGCTCTTCATTGATTGAATATGCTCAAATTGAACAATGGAATGA
TTTTTCTGCCACTGAAATTGATGCAAACATTGCACGATGGCTGTACCCACGCCTTGGCTATGCTGTTTACATCTCTCAAGCTGAGGAAGG
TGCAGTAGCTGCATTAAAGAGAGCGCTTGGTGCTTTGAACACCCATCTTGCATCTAACACATACTTGGTTGGACATTTTATCACACTGGC
TGACATCATCATGGTCTGTAACTTGAGCATTGGTTTTAGGATGATATTGACCAAGAGCTTTACCAAGGAATTTCCACATGTAGAGAGATA
TTTCTGGACTGTTGTTAATCAGCCTAATTTCGTCAAGATATTGGGTGAGGTGAAACAAGCTGAATCTATCCCTGCTGTGCAATCCAAGCC
TGCACAACCTGAAAAACTCAAGGCTAAGGAGGAGCCAAAGAAGGAGGTTAAGAAGGAAGAACCAAGTCCTGTAGAGGAGGAAGCAGCACC
CAAACCTAAGGCAAAGAATCCTCTTGATCTCTTGCCTCCAAGTAAGATGATTCTGGATGACTGGAAGAGGCTTTACTCTAACACCAAGAC
CAACTTCCGTGAGGTTGCCGTTAAAGGTTTCTGGGACATGTATGACCCCGAAGGATATTCTCTCTGGTTTTGTGATTACAAGTACAATGA
TGAGAACACAGTTTCCTTTGTAACCTTGAACAAGGTTGGTGGTTTTCTGCAGAGGATGGATCTGGTTCGCAAGTACGCTTTTGGTAAGAT
GTTGATTGTTGGTTCTGAGGCCCCATTCAAGGTGCAGGGCTTGTGGCTTTTCCGTGGAAAGGAAATTCCCATGTTTGTTATGGAGGAGGT
CTATGACATGGAACTCTATGAATGGAAGGAAGTAGACATCAATGATGAAGCTCAGAAGGAGCGGGTTAGCCAAATGATTGAAGACCACGA
GCCTTTTGAGGGAGAGGCTCTGTTGGACGCGAAGTGCTTCAAGTAAAACAACATTGTATTAGATTCAACAATGTTACCTTTTGACTGAGG
CTGTAGTTTACTCCGGTTGTCTTCCCAAATTTACTTAGATTCTTGTTTTAAACACTATATTGTCTTAGAGAAACTATGGTTGAATTATGT
TATCTTTTCAAGTAAAGCAGTTTTGACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	8
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (88)

Alignment image suppressed for unigene with 88 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	119155	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19
5	129505	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19

Preceding Unigenes (3)

Unigene	Build
SGN-U212995	Lycopersicon Combined #3
SGN-U212996	Lycopersicon Combined #3
SGN-U217294	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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