Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581081 in the current build, Tomato 200607 #2

Unigene SGN-U314955

Unigene Basic Information

Unigene ID:	SGN-U314955
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314955
mRNA sequence:	Length: 1656 bp

>SGN-U314955 Tomato 200607 #1 (137 members)
AGATTGTTGTTGGCCACAAATTAGTTAGAAACTGAGTGCCAAAAGAGCAAAGGGTAAGGGCTGTAGAATCATACACTTCTCTTATCCTCA
CATCCAATCTCCTCCACCCAATTCATAATCCACTACCCAATCTCTACTAAAAACATCCCAATTCCCATTTCTCCTTATTTTTCCTTCTTC
ACCATTCCCCCCCTCTTAATTCTCTTTACTCATAATTCATAAAAAAACATGGCTACTGCAGTAAGTGCTGCAGTTTCTCTTCCTTCATCC
AAGTCCACCTCCTTTTCCTCTAGAAACTCCATCATCTCTACAGACAAAATCAACTTCAACAAGGTGCCCTTGTACTACAGAAATGTGTCT
GGTGCTAGTAGATTAGTTTCTATCAGAGCCCAAGTGACCACTGAGGCTCCTGCTAAAGTTGAGAAGATTTCAAAGAAACAGGAGGAAGGT
GTGATTGTCAATAAATTCAGGCCAAAGGAACCTTATGTTGGTAGATGTCTGCTAAACACTAAGATCACTGGTGATGATGCACCTGGTGAA
ACTTGGCATATGGTTTTCAGCACTGAGGGAGAGGTCCCATATAGAGAAGGACAATCCATTGGGGTAATTGCTGATGGTGTTGATGCCAAT
GGGAAGCCTCACAAGCTTAGATTGTACTCAATTGCTAGCAGTGCCCTTGGTGACTTCGGTGACTCCAAAACTGTTTCCCTGTGTGTCAAG
AGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTATGTGACTTGAAGCCTGGAGCAGAGGTCAAG
ATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGCTTGCCACTGGAACTGGAATTGCTCCT
TTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACC
AGCAGCTCACTACTTTACAAGGAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAG
CAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAAC
ACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTATTGTCTGG
GCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCC
AACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTA
AATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGC
TGAATCAACCAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAACTACAATATCCTTTGTTGAGGTATGGGTCAATGTAGTTCTTTATGA
ATTAATTATTAACGTTTATATAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	12
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	13
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	12
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	7
Solanum lycopersicum	cLER	leaf 4 weeks	5127	12
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	14
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (137)

Alignment image suppressed for unigene with 137 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (10)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101624	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	56
2	118990	Ferredoxin--NADP reductase - Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324) - Biological Process: electron transport (GO:0006118) - Cellular Component: thylakoid membrane (GO:0042651) - Molecular Function: FAD binding (GO:0050660) - Molecular Function: NADP binding (GO:0050661) Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	23
5	129986	Ferredoxin--NADP reductase - Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324) - Biological Process: electron transport (GO:0006118) - Cellular Component: thylakoid membrane (GO:0042651) - Molecular Function: FAD binding (GO:0050660) - Molecular Function: NADP binding (GO:0050661) Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	13

Preceding Unigenes (1)

Unigene	Build
SGN-U212547	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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