Sol Genomics Network

Unigene SGN-U579115

Unigene Basic Information

Unigene ID:	SGN-U579115
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1445 bp

>SGN-U579115 Tomato 200607 #2 (87 members)
GGCGATTGGCGGCCAATCGGCCGAATTGGTAAAACTAAAATACATTTTCTCTTCAAATTGAGCTTTTTCTCCATTAAAATTCTCTCTGCA
AATTTATAGTTTTTCTTTTTTCACTTTTTGAGAAGAAATCAAAAGCTATGTGTGGTGGTGCAATTATCTCCGATTTGGTACCTCCTAGCC
GGATTTCTCGCCGGTTAACCGCTGATTTTCTATGGGGTACATCCGATCTGAACAAGAAGAAGAAGAACCCTAGTAATTACCACTCAAAGC
CCTTGAGGTCTAAGTTTATTGACCTTGAAGATGAATTTGAAGCTGACTTTCAGCACTTCAAGGATAATTCTGATGATGATGATGATGTGA
AGGCATTTGGCCCCAAATCCGTGAGATCTGGTGATTCAAACTGCGAAGCTGACAGATCCTCCAAGAGAAAGAGGAAGAATCAGTACCGGG
GGATCAGACAGCGTCCTTGGGGTAAGTGGGCAGCTGAAATACGTGATCCAAGGAAAGGTATTCGAGTCTGGCTTGGTACTTTCAATTCAG
CCGAAGAGGCAGCCAGAGCTTATGATGCTGAGGCGCGAAGGATCAGAGGCAAGAAAGCTAAGGTGAACTTTCCTGATGAAGCTCCAGTGT
CTGTTTCAAGACGTGCTATTAAGCAAAATCCCCAAAAGGCACTTCGTGAGGAAACCCTGAACACAGTTCAGCCCAACATGACTTATATTA
GTAACTTGGATGGTGGATCTGATGATTCGTTCAGTTTTTTCGAAGAGAAACCAGCAACCAAGCAGTACGGCTTCGAGAATGTGTCTTTTA
CTGCTGTAGATATGGGACTGGGCTCAGTTTCCCCTTCAGCTGGTACAAATGTTTACTTCAGCTCTGATGAAGCAAGTAACACTTTTGACT
GCTCTGATTTCGGTTGGGCTGAACCGTGTGCAAGGACTCCAGAGATCTCATCTGTTCTGTCGGAAGTTCTGGAAACCAATGAGACTCATT
TTGATGATGATTCCAGACCAGAGAAAAAACTGAAGTCCTGTTCCAGCACTTCATTGACAGTTGACGGTAACACTGTGAACACGCTATCTG
AAGAGCTATCGGCTTTTGAATCCCAGATGAAGTTCTTGCAGATCCCATATCTCGAGGGAAATTGGGATGCATCGGTTGATGCCTTCCTCA
ATACAAGTGCAATTCAGGATGGTGGAAACGCCATGGACCTTTGGTCCTTCGATGATGTACCTTCTTTAATGGGAGGTGCCTACTAAGCTG
CATACACATCTTCCCTTGCTAAGTTTTGTAAATAACGCTTCATTTGAGTGAAGTTTGCGCCTGCGTTTACGTTTATCACCAAACTAAAAG
ACTATATATGTGTTGTATTAATTTATTCAAAATTTACTCGTTTGATATATGTAAGTATGTATCCTTGTTTTCATAAGTCAATGTCTTATT
TTCTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Sl-ERF_A_3	Ethylene Response Factor A.3	transcriptional regulator

Genomic locations (0)

None

Library representation (29)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	13
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	4
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	4
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	1
Solanum lycopersicum	Sl_RootSSH01	root	123	1
Solanum lycopersicum	Sl_RootSSH03	root	149	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	15
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (87)

Alignment image suppressed for unigene with 87 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U313487	Tomato 200607 #1
SGN-U313488	Tomato 200607 #1
SGN-U334402	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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