Sol Genomics Network

Unigene SGN-U579280

Unigene Basic Information

Unigene ID:	SGN-U579280
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1606 bp

>SGN-U579280 Tomato 200607 #2 (174 members)
ATTGGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGC
CAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGT
AGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGCTTCCCCTGGCCCCAAAAAGATTGT
GGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTT
AGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGAGCTTGAGAAACACATTCCTGATCTCCATGTGTT
GATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGG
ATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGA
TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGC
GCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATT
TAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAA
GATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAAGGAATGTTTGACAAGGAAAGAATTGCAAAGTT
GAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGC
AGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACAT
TTCTGGGACTACCATTGATGCACAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGC
TGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAA
TAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGC
TGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAAC
TTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
fdh	formate dehydrogenase	formate dehydrogenase

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	3
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	2
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	1
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	2
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	23
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	32
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	9
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	9
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	13
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (174)

Alignment image suppressed for unigene with 174 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U312799	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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