Sol Genomics Network

Unigene SGN-U579474

Unigene Basic Information

Unigene ID:	SGN-U579474
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1669 bp

>SGN-U579474 Tomato 200607 #2 (174 members)
AAGTTGAAACAATTTTTACTCATCTTTTTATTTTTATTTTTTTCATTAATAACTTCAAAATGTTAGAGCTAGGAAATGAACAAAATGGTT
ACAAAGGGAATCCTCTAAATCAAGCTCACATCAAATAATCTAAACAAATTTGGTGCTTGAGTAAACAAGAAAATAGAGACACAACGTACT
CAATTACAACACATACCCAGTGTAGTCCCACAAGTGGGATCTGGGGAGGGTAGGATGTACGCACACCTTACCCTACCTTTGTGAGGTAGA
GAGATTGACTTGTTCCCGTTGACCCTCGGCTAACATAGTCGTTCTGCTACTTTTTTAAATCAAAGCTCACACCAACTAGTTTACAAAGTT
CACTTGAAAATCTTCCTCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCA
GTTGAGAAGAAGAAAAAACTTATCCAAATTCAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGC
ATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCT
TGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGA
GGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTC
AGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGG
ATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGT
CCTAATCAAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGAT
TATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATA
TGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTA
TTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGC
AAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTA
TGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATAAAAAAAAAAAAAAAAGCTGATGTTTGT
CATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAA
ACAATAGAGCCAATATATATAGGAGAAAATAAAAAGTTGAAGTTCAGCC

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
Cpn21	chaperonin 21 precursor
TOMAADEHYD	aminolevulinic acid dehydratase	aminolevulinic acid dehydratase

Genomic locations (0)

None

Library representation (34)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	8
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	4
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	5
Solanum lycopersicum	SSH_3DPA	flower 3 days after Anthesis	252	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	25
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	14
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	12
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	16
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (174)

Alignment image suppressed for unigene with 174 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312669	Tomato 200607 #1
SGN-U333820	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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