Sol Genomics Network

Unigene SGN-U580107

Unigene Basic Information

Unigene ID:	SGN-U580107
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 3114 bp

>SGN-U580107 Tomato 200607 #2 (103 members)
GCAAGTATTGCATTCCTACTTCATCGCTAATAGAAGGACCTAGAATCTCATGCATTCGTATATAAACCCTCAACTCTCATGCTTTAGCTC
ATCAAAAATCGCAACTCACAAGTTTTCTTTCTCAAATTACCATTAACTTCTTATTCATTTTCACTTTATCGGCTTTCTTCTTTTTTTTTT
GGTTTTGTTGAGCTTTGAGCATCAATGGCGGATGTGCAGATGGCTGAGGCAGAGACATTTGCTTTTCAGGCTGAGATTAACCAGTTGTTG
AGTTTGATCATCAATACTTTCTACAGTAACAAGGAGATTTTCCTTCGTGAACTCATTAGCAATTCTTCTGATGCATTGGATAAGATCCGG
TTCGAGAGCTTGACGGACAAGAGTAAACTCGATGCGCAGCCTGAACTCTTTATTCGCCTTGTTCCTGACAAGGTGAATAAAACTCTCTCC
ATTATTGACAGCGGTATTGGCATGACTAAAGCAGATCTGGTTAACAATCTGGGTACGATTGCGAGGTCCGGCACAAAGGAGTTCATGGAA
GCTCTACAGGCTGGGGCTGATGTGAGCATGATTGGACAATTTGGTGTGGGTTTCTACTCTGCGTATCTCGTAGCAGAGAAGGTTATTGTA
ACCACCAAGCACAACGATGATGAGCAGTATATCTGGGAATCACAAGCCGGTGGTTCATTCACTGTCACAAGGGATGTTGATGGAGAGCAA
TTGGGCAGAGGAACTAAAATCACTCTCTTCCTCAAGGAAGACCAGTTGGAGTACTTGGAGGAAAGGAGAATCAAAGACCTTGTGAAGAAG
CATTCTGAATTCATTAGCTACCCAATTTATCTCTGGACAGAGAAGACAACTGAGAAGGAAATCAGTGATGATGAAGATGATGAACCCAAG
AAAGAACAAGAGGGTGATATTGAGGAAGTGGATGAGGATAAAGAGAAGGAGAAAGGTAAGAAGAAGAAAATCAAGGAGGTTTCTCATGAG
TGGCAGCTCATTAACAAGCAGAAACCTATCTGGTTGCGCAAACCAGAAGAAATTACTAAGGAGGAATATGCGGCTTTCTACAAGAGCCTG
ACCAATGATTGGGAGGAACACCTTGCAGTCAAACACTTCTCTGTTGAGGGGCAACTTGAATTCAAGGCAATCCTCTTTGTACCTAAGAGG
GCTCCATTTGATCTATTTGACACCCGCAAGAAGATGAACAACATCAAACTTTATGTCAGGAGGGTGTTCATCATGGACAACTGTGAGGAA
CTTATCCCTGAGTACCTTGGATTCGTGAAGGGTGTTGTTGACTCTGATGATTTGCCCCTCAATATCTCCCGTGAAATGCTGCAGCAGAAC
AAGATTCTCAAGGTCATTAGGAAGAACCTCGTGAAGAAATGTATTGAGATGTTCAATGAGATTGCAGAGAACAAGGAGGACTACAACAAG
TTCTACGAGGCTTTCTCAAAGAACTTGAAGCTGGGCATTCATGAAGATAGCCAGAACAGGGCTAAGTTGGCTGACCTCCTTCGATATCAG
TCAACCAAGAGTGGTGATGAGCTGACAAGTTTGAAAGATTATGTAACCAGGATGAAGGAGGGTCAGAAAGACATCTACTACATCACTGGA
GAGAGCAAAAAGGCAGTTGAAAATTCACCATTCTTGGAACGCCTAAAGAAGAAAGGATATGAAGTACTCTTCATGGTTGATGCCATTGAT
GAATATGCTATTGGGCAACTGAAGGAATATGATGGTAAGAAACTGGTTTCTGTTACAAAGGAGGGACTGAAGCTCGATGACGAGAGCGAA
GAAGAAAAGAAGAAAAAGGAAGAGAAAAAACAATCCTTTGAGAGCCTTTGCAAGGTCATCAAGGACATTCTTGGAGACAAAGTTGAGAAG
GTTGTAGTCTCTGATAGGATTGTTGATTCTCCATGTTGCTTAGTGACAGGTGAGTATGGTTGGACAGCTAACATGGAAAGGATCATGAAA
GCTCAAGCTTTGAAGGACAATAGCATGAGCTCTTACATGTCTAGCAAGAAGACAATGGAAATCAACCCTGATAATGGCATTATGGAGGAG
TTGAGGAAGAGAGCTGAAGTTGACAAGAATGACAAGTCGGTGAAAGATCTTGTGTTGCTGCTGTTTGAGACAGCTTTGCTAACATCTGGT
TTTAGTCTTGATGACCCGAATACATTTGCTGCAAGAATTCATAGAATGCTGAAGTTGGGTTTGAGCATTGACGAAGAAGAGGAAGCTGGT
GTGGATGTTGATGATATGCCTCCTCTGGAGGATGTTGGTGAGGAAAGCAAGATGGAGGAAGTGGACTAAGGCATTATGCGTCATCTATAT
GCGGCTCATATTGAGATGCGTGAAAACACAATTTGAGCGTGTTGCTTTTTTTCTCATCTTGTGTCTAGTATAGTTTTTTTTTTTAGGCAA
GAAAAGCTGTTCAATCAAAATGATCAATTAACAAAGGTTGGCATATTACATTGAAAGTAACTTTAGTTTCATGGGTGTCAACTGGGACTT
TGGACCAAAGCCTTATGCAACTAACCCTTCACAACAACCTGAAGTACTCACAATTACAATTACAACATAGTGTTGATAGACAAAAGGTAA
AGAAGTGATAAAACAATTATCCAACTGTATATTGGAGAATTGCTTAGTTGCTGCCACCGCCGAAGAGATAACCCAAAGAAGATCCACCTC
CAGGAGCAGCATGGACTTTGGTAGATGGCCGGTCCGTGATAAAGTTGCCTGTGTTTTGACCATCTCCCCCAAAATGGTTTCTTGAAGCAG
TGCTCTGAATACCAGCAGGAATCTGCTTAGTAGCATCAACTGTAGCGGAAACGGTAGGCTTTGAAGCTGGCTCCTTATTTATTGCCTGCC
CTTCACTTTGAACAGCTGGGGCATTTCCCGTGGTTGGTTTTGGCGCCTCACCGTTTCCAAATAAGTATCCCAGTGAACTTTGCCCTCCTC
CATAGCTGACTCCACGACCCATTTCTGTAATTCTCTCTTGTTAAAGAATCCCAGGAAAAACCTTTGATTCTTTTGGATCAGATCAGTATT
TGGATGTGAAGAAGAAATGGAAGTACAGAATATTGCCCTCTCTTGTTCACCTAT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
hsp90	heat shock protein 90

Genomic locations (0)

None

Library representation (34)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	16
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	9
Solanum lycopersicum	LeHRU	roots Three weeks old	312	1
Solanum lycopersicum	LeHSU	shoots Three weeks old	122	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	4
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	LeWCAD	Seedling Two-week-old seedings	227	1
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	1
Solanum lycopersicum	Sl_RootSSH02	root	152	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (103)

Alignment image suppressed for unigene with 103 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U313364	Tomato 200607 #1
SGN-U313365	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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