Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580819, SGN-U581439, SGN-U590818, and SGN-U593758 in the current build, Tomato 200607 #2

Unigene SGN-U314922

Unigene Basic Information

Unigene ID:	SGN-U314922
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314922
mRNA sequence:	Length: 2235 bp

>SGN-U314922 Tomato 200607 #1 (197 members)
TTTATCCAAATAAGAAGATAAACCCACTCCCCAGCTACTTCTTCGACGACTCTACACTAAAACCCTAATCTTCCTTTCTCAGGGAAAGAT
GGCATCTACTTTTGCTGGTATGTCCTCAGCAGGTCCCTTGGCTGCTCCCAGCACTTCCTCAAACAAGCTTTCCTCTGTTGCTAATATATC
TTCCACCTCTTTCGGGAGCAAAAGAAATGTTGCACTAAAAAAGTCACGCAGGCCAACAATTTTGGCTGCAGCTAAAGAGTTGCACTTCAA
CAAGGATGGCTCCGCTATCAAGAAGCTACAGAATGGTGTGAACAAACTTGCTGATCTAGTTGGAGTTACTCTTGGCCCAAAAGGCAGGAA
TGTTGTCCTTGAGAGCAAGTATGGTGCTCCAAAAATTGTTAATGATGGAGTTACTGTGGCCAGAGAGGTTGAATTAGAGGATCCAGTAGA
AAACATTGGTGCGAAATTAGTGAGACAAGCTGCTGCCAAAACCAATGACTTGGCTGGGGATGGGACTACTACATCTGTCGTGCTAGCTCA
GGGCCTAATTGCTGAAGGTGTTAAGGTGGTTGCAGCTGGTGCAAACCCTGTCCTAATCACCAGAGGAATTGAGAAGACAGCAAAAGCATT
AGTAGCTGAGTTGAAGAATATGTCAAAAGAGGTGGAAGACAGTGAACTAGCAGATGTGGCTGCAGTAAGTGCTGGCAACAATTTGGAAGT
AGGGAGTATGATTGCTGAAGCCATGAGCAAGGTTGGAAGGAAAGGTGTTGTGACACTAGAGGAGGGTAAAAGTGCTGAAAACAGTCTGCG
TGTGGTTGAAGGAATGCAATTTGACCGTGGTTATGTCTCTCCTTACTTTGTTACCGACAGTGAGAAAATGTCCGTTGAATATGAGAACTG
TAAGTTGCTACTGGTTGATAAAAAGATAACAAATGCAAGAGATCTTGTTAATGTCCTGGAAGATGCTATCAGAAATGGTTACCCAATTTT
AATTATTGCTGAAGATATTGAGCAGGAAGCTTTGGCAACTCTTGTTGTCAATAAGCTTAGAGGTGCCTTGAAGGTCGCTGCACTTAAAGC
TCCTGGTTTTGGTGAGCGAAAAAGCCAGTATCTTGATGACATAGCAACCCTTACTGGAGGCACTGTTATTAGGGAGGAGCTTGGCCTTAC
CTTGGACAAGGCTGACAAGGAAGTTCTAGGTCATGCTGCTAAAGTAGTGCTGACTAAGGATGCCACTACAATTGTTGGTGATGGTAGCAC
TCAGGAAGCAGTCAACAAACGTGTTGCACAGATTAAAAACCTGATAGAGGCTGCAGATCAAGATTATGAAAAGGAAAAGCTAAATGAAAG
AATTGCTAAGTTATCAGGAGGTGTGGCTGTCATACAGGTTGGAGCTCAAACTGAAACTGAATTGAAGGAGAAGAAACTTAGAGTAGAAGA
TGCTCTCAATGCAACAAAGGCAGCTGTTGAGGAAGGTATTGTTGTTGGAGGAGGGTGCACGCTCCTCAGACTTGCTGCAAAAGTTGATGC
CATAAAGGGAACCCTTGCAAATGATGAGGAGAAGGTTGGAGCGGATATTGTCAAAAGAGCATTGAGCTACCCTTTGAAATTGATTGCTAA
AAATGCTGGTGTTAATGGAAGTGTTGTCAGTGAGAAGGTGCTGTCAAGTGATGATCCAAAATTTGGATATAATGCTGCAACTGGCAACTA
TGAAGACTTAATGGCTGCTGGCATCATTGATCCAACAAAGGTGGTGAGGTGTTGTCTAGAACACGCTGCATCTGTAGCGAAGACATTCTT
AATGTCAGATTGTGTGGTGGTTGAGATCAAGGAGCCCGAAGCAGCAGTTGCTGGCAACCCGATGGACAACTCAGGATACGGTTACTAGGT
GATTGAATGAAGGCTACTGTTATCAGATAAGATGAAGTTGAAAGCCTTTATTTTTTTGTAAAAGCTTAGGTATTGTTTGTCGAAGGGAAT
ATATAAGATCCTGGTTGGAGTAGCAGCCTTCAGGGTTCGGCACTGTTAATTAACATGCAATCCAATGTGTAATTGCAGCTTCAGTGGATG
TTGAGTCACAGGACATTAATAAATCTTTTATGTAATTTCTTAAATTTCAAAAAAAAAAAAAAAAAATCATTAGTCATGTGGAATAGTCAT
GGAATTTAACCTAAATAGTCTTGGCATTATTATATATAGTATTTTATAGTGTTAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	14
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	30
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	9
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	21
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	8
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	8
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	10
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (197)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

Preceding Unigenes (1)

Unigene	Build
SGN-U212790	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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