Sol Genomics Network

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Unigene SGN-U580936

Unigene Basic Information

Unigene ID:	SGN-U580936
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 772 bp

>SGN-U580936 Tomato 200607 #2 (86 members)
GGGGACGCTGAAAAAAAAATCAAAATTGAGTAGGAGGATTTCTGAGGGATTTTGTGTACGGAAATGGCATCCAAGAGGATTCTGAAAGAG
CTCAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGCCCAGTTGCGGAAGATATGTTTCACTGGCAAGCGACACTTATGGGT
CCATCTGACAGTCCTTATGCTGGTGGAGTGTTTCTTGTGACCATTCATTTTCCACCCGATTATCCATTTAAGCCTCCAAAGGTAGCTTTT
AGGACAAAGGTTTTTCACCCAAACATCAACAGCAATGGCAGCATTTGCCTCGACATTCTGAAGGAACAATGGAGCCCGGCACTTACGATT
TCCAAGGTGCTGCTGTCAATCTGCTCTCTGCTAACAGACCCTAATCCCGATGATCCTTTGGTGCCCGAGATTGCTCATATGTACAAGACT
GATAAAAGCAAGTACGAAGCAACTGCTCGGAGCTGGACCCAAAAGTATGCAATGGGTTAGTTGCTGCTCAGACCCATGTCCGGAGGGGGG
CTCCTTTCCCTCTGAGTTTGTGGTCATTGTCTATGACATATTAAGAAGTGTTTGTTTCTTCATGTATAATCAACTTGAGAGGAAAGCTTG
AATTGTGGCCTCACTGTGAAACATTGAGTTTGCTGTGTCTGTAAACCTTTAATGGCTTTTAAATCCTGTGGATGGGTTCAAACTAGTAGA
CATCTGACCCTTGGCAACTGAAGTAAGTGATCTCTTAACGCTTAAATGCTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc08g008220	Solyc08g008220

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	12
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	7
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	2
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	3
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	3
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	6
Solanum lycopersicum	Sl_LeafWT01	leaf 1.5-month old plants	106	2
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	12
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (86)

Alignment image suppressed for unigene with 86 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312839	Tomato 200607 #1
SGN-U333964	Tomato 200607 #1
SGN-U333966	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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