Sol Genomics Network

Unigene SGN-U581439

Unigene Basic Information

Unigene ID:	SGN-U581439
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2410 bp

>SGN-U581439 Tomato 200607 #2 (217 members)
CTAGCAGTTTCCTTTTATCCAAATAAGAAGATAAACCCACTCCCCAGCTACTTCTTCGACGACTCTACACTAAAACCCTAATCTTCCTTT
CTCAGGGAAAGATGGCATCTACTTTTGCTGGTATGTCCTCAGCAGGTCCCTTGGCTGCTCCCAGCACTTCCTCAAACAAGCTTTCCTCTG
TTGCTAATATATCTTCCACCTCTTTCGGGAGCAAAAGAAATGTTGCACTAAAAAAGTCACGCAGGCCAACAATTTTGGCTGCAGCTAAAG
AGTTGCACTTCAACAAGGATGGCTCCGCTATCAAGAAGCTACAGAATGGTGTGAACAAACTTGCTGATCTAGTTGGAGTTACTCTTGGCC
CAAAAGGCAGGAATGTTGTCCTTGAGAGCAAGTATGGTGCTCCAAAAATTGTTAATGATGGAGTTACTGTGGCCAGAGAGGTTGAATTAG
AGGATCCAGTAGAAAACATTGGTGCGAAATTAGTGAGACAAGCTGCTGCCAAAACCAATGACTTGGCTGGGGATGGGACTACTACATCTG
TCGTGCTAGCTCAGGGCCTAATTGCTGAAGGTGTTAAGGTGGTTGCAGCTGGTGCAAACCCTGTCCTAATCACCAGAGGAATTGAGAAGA
CAGCAAAAGCATTAGTAGCTGAGTTGAAGAATATGTCAAAAGAGGTGGAAGACAGTGAACTAGCAGATGTGGCTGCAGTAAGTGCTGGCA
ACAATTTGGAAGTAGGGAGTATGATTGCTGAAGCCATGAGCAAGGTTGGAAGGAAAGGTGTTGTGACACTAGAGGAGGGTAAAAGTGCTG
AAAACAGTCTGCGTGTGGTTGAAGGAATGCAATTTGACCGTGGTTATGTCTCTCCTTACTTTGTTACCGACAGTGAGAAAATGTCCGTTG
AATATGAGAACTGTAAGTTGCTACTGGTTGATAAAAAGATAACAAATGCAAGAGATCTTGTTAATGTCCTGGAAGATGCTATCAGAAATG
GTTACCCAATTTTAATTATTGCTGAAGATATTGAGCAGGAAGCTTTGGCAACTCTTGTTGTCAATAAGCTTAGAGGTGCCTTGAAGGTCG
CTGCACTTAAAGCTCCTGGTTTTGGTGAGCGAAAAAGCCAGTATCTTGATGACATAGCAACCCTTACTGGAGGCACTGTTATTAGGGAGG
AGCTTGGCCTTACCTTGGACAAGGCTGACAAGGAAGTTCTAGGTCATGCTGCTAAAGTAGTGCTGACTAAGGATGCCACTACAATTGTTG
GTGATGGTAGCACTCAGGAAGCAGTCAACAAACGTGTTGCACAGATTAAAAACCTGATAGAGGCTGCAGATCAAGATTATGAAAAGGAAA
AGCTAAATGAAAGAATTGCTAAGTTATCAGGAGGTGTGGCTGTCATACAGGTTGGAGCTCAAACTGAAACTGAATTGAAGGAGAAGAAAC
TTAGAGTAGAAGATGCTCTCAATGCAACAAAGGCAGCTGTTGAGGAAGGTATTGTTGTTGGAGGAGGGTGCACGCTCCTCAGACTTGCTG
CAAAAGTTGATGCCATAAAGGGAACCCTTGCAAATGATGAGGAGAAGGTTGGAGCGGATATTGTCAAAAGAGCATTGAGCTACCCTTTGA
AATTGATTGCTAAAAATGCTGGTGTTAATGGAAGTGTTGTCAGTGAGAAGGTGCTGTCAAGTGATGATCCAAAATTTGGATATAATGCTG
CAACTGGCAACTATGAAGACTTAATGGCTGCTGGCATCATTGATCCAACAAAGGTGGTGAGGTGTTGTCTAGAACACGCTGCATCTGTAG
CGAAGACATTCTTAATGTCAGATTGTGTGGTGGTTGAGATCAAGGAGCCCGAAGCAGCAGTTGCTGGCAACCCGATGGACAACTCAGGAT
ACGGTTACTAGGTGATTGAATGAAGGCTACTGTTATCAGATAAGATGAAGTTGAAAGCCTTTATTTTTTTGTAAAAGCTTAGGTATTGTT
TGTCGAAGGGAATATATAAGATCCTGGTTGGAGTAGCAGCCTTCAGGGTTCGGCACTGTTAATTAACATGCAATCCAATGTGTAATTGCA
GCTTCAGTGGATGTTGAGTCACAGGACATTAATAAATCTTTTATGTAATTTCTTAAATTTCAAATCTTCATTAGTCATGTGGAATAGTCA
TGGAATTTAACCTAACTAGTCTTGGCATTATTATATATAGTATTTTATAGTGTTGCCCGAGGGAAAAAAAAAAACTATTCTCTCTCCCCA
AATCTTTTGGAGGACCTTGAAAAGGTTTTCCCCGAGGAAGGGGAACCCTTTAGGGAAATTCTTGCACCTTTTGCACCTGAGGCAAAACGT
TTGGCCCAAGCCCAAAGTCTTTTGCCAAATGGAAATGTAAAGGGGAAACCTGGAAAAAAACTTCAACTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc01g028810	Solyc01g028810

Genomic locations (0)

None

Library representation (35)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	LeMiToFr02	fruit	18697	5
Solanum lycopersicum	LeMiToLf01	leaf	30679	9
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	14
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	32
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	9
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	6
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	21
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	8
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	8
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	8
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	9
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (217)

Alignment image suppressed for unigene with 217 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 4 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U314921	Tomato 200607 #1
SGN-U314922	Tomato 200607 #1
SGN-U339178	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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