Sol Genomics Network

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Unigene SGN-U565569

Unigene Basic Information

Unigene ID:	SGN-U565569
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1372 bp

>SGN-U565569 Tomato 200607 #2 (113 members)
GATTTTCTCCGCCGTAGCTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGG
AGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCC
GGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGT
GTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAGGTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCT
GATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCT
CTATGCACGGCCATTGCTAAGTACTGCCCCAATGCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAG
GTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGA
AAAGCTAAAGTAAATGTTGCTGAGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAAGCCACT
CCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGA
AAGGGTTCAGCCACCCTCTCAATGGCCTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTT
GAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAGGTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTA
GGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTT
GCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTT
GCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCC
TATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAATCGTTTTCCAATTATGGTTAGTAGCAGACAATTGATGCAAAATGAAGA
AATGTTCATGACCAATTACTGC

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
mmdh	mitochondrial malate dehydrogenase	malate dehydrogenase
Solyc07g062650	Malate dehydrogenase	Malate dehydrogenase

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	16
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	18
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (113)

Alignment image suppressed for unigene with 113 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 4 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U313128	Tomato 200607 #1
SGN-U334181	Tomato 200607 #1
SGN-U334183	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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