Sol Genomics Network

Unigene SGN-U578489

Unigene Basic Information

Unigene ID:	SGN-U578489
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 942 bp

>SGN-U578489 Tomato 200607 #2 (230 members)
GGCGATTGGCGGCCAATCGGCCGAATTCCGCTCCTTCGCTTTGCGAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAG
CTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAG
AGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGTCCTGAT
GACACTCCTTGGGATGGTGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCT
CGCATGTTTCATCCTAATATTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCA
ATACTTACATCCATTCAGTCATTGCTGTGTGATCCAAACCCCAACTCACCTGCAAACTCGGAAGCAGCTCGGATGTTCAGTGAGAATAAA
AGGGAGTACAATCGCAGAGTGAGAGAAATTGTTGAGCAGAGCTGGACTGCTGACTGATTCTAGGGACGAAAGATGTCCTTGCAGACCTCA
GATGAAGAGCACCATGGCTCAGCTATGTTATATTTACGGATTGAAACCTCCTCTTTGAAATTTTATTTGAATGGAACTCTCATTTTGTTT
GATCCTAGTATTCTGGTTAGGTTCTATTGCCTAATTGTCATTTGCTGCATTGCATTGACAAGCTTCTGTAATATATGGATTGCGTTTTGG
TTTAGAAATGCAAGGAACTTCCCATACGCATGGGAATTGTTTTTCATGTACTTATTTTGCTATAAAATTTTGAGTAGTTCTAAGCGGATT
TGAATGGAGCTATCACTGGTGAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc06g070980	Solyc06g070980

Genomic locations (0)

None

Library representation (42)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	21
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	2
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	2
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	8
Solanum lycopersicum	Sl_LeafWT01	leaf 1.5-month old plants	106	1
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	1
Solanum lycopersicum	Sl_RootSSH01	root	123	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	21
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	12
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	36
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	32
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	9
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	10
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (230)

Alignment image suppressed for unigene with 230 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (10)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U312546	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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