Sol Genomics Network

Unigene SGN-U579510

Unigene Basic Information

Unigene ID:	SGN-U579510
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1728 bp

>SGN-U579510 Tomato 200607 #2 (338 members)
TTGGCAACCAATCATAACTACGGTTAAGTTTAAACTAACCGTGGTTCTCAACCGCAAGATTTTATTTCTTGGGAGTTGTTCACGGTATAA
AAAGGGCTTCTCAGCACAGAGAATGTATCAGATCTGAAAATCTTCGGAAGAGGCGTCTTGATAAACGTCCTTTCGTTTTGAATTTGAAAT
TTGAAGATTTCTAAATAAAAAAAGCAGCGAAAATGAGAGAATGCATATCGATCCACATTGGTCAGGCCGGTATTCAGGTCGGAAATGCAT
GCTGGGAACTTTACTGCCTTGAGCATGGCATTCAGCCTGATGGCCAGATGCCAGGCGACAAGACAGTTGGAGGAGGTGATGATGCCTTCA
ACACCTTCTTCAGTGAAACTGGAGCTGGAAAGCATGTTCCCCGTGCTGTCTTTGTGGATCTTGAGCCTACTGTCATTGACGAAGTCAGGA
CAGGAACATACAGGCAGCTCTTTCACCCTGAGCAGCTCATCAGTGGCAAAGAAGATGCAGCCAACAACTTTGCCCGTGGACATTATACAA
TTGGGAAGGAGATAGTTGATCTCTGCTTGGATCGTATCAGGAAGCTTGCTGATAACTGTACTGGTCTTCAAGGTTTCCTGGTTTTCAATG
CTGTAGGTGGTGGAACTGGTTCTGGTCTTGGGTCACTTCTGCTGGAGCGTCTCTCTGTGGACTATGGAAAGAAATCAAAACTTGGTTTCA
CCATTTATCCATCACCACAGGTCTCAACCTCTGTGGTGGAACCTTACAACAGTGTCCTGTCAACCCACTCCCTTCTTGAGCACACTGATG
TTGCAATTCTTCTTGACAATGAGGCTATCTATGACATCTGCAGGCGCTCATTGGACATTGAGCGTCCCACATACACCAATCTTAACCGTC
TTATTTCACAGGTTATCTCTTCACTTACTGCTTCTTTGAGGTTTGATGGAGCCCTGAATGTTGATGTCAATGAATTCCAGACCAACCTTG
TTCCCTACCCCAGAATTCATTTTATGCTTTCATCCTATGCTCCTGTCATTTCAGCTGAGAAAGCCTACCATGAGCAGCTGTCAGTTGCAG
AGATCACCAACAGTGCTTTTGAGCCATCTTCCATGATGGTCAAGTGTGATCCTCGCCACGGCAAGTATATGGCTTGCTGCCTTATGTTCC
GTGGTGATGTTGTGCCAAAGGATGTGAATGCTGCTGTGGCTACCATCAAGACTAAGCGCACCATCCAATTTGTTGACTGGTGCCCTACTG
GATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCTGGAGGTGATCTTGCCAAGGTGCAAAGGGCTGTATGTATGATTTCCA
ACTCAACCAGTGTTGCTGAGGTCTTCTCACGCATTGACCACAAGTTCGATCTCATGTATGCAAAGCGTGCTTTTGTCCACTGGTATGTTG
GTGAGGGTATGGAAGAAGGCGAGTTCAGTGAAGCACGTGAAGATTTAGCTGCTTTGGAGAAGGATTACGAGGAGGTTGGTGCTGAATTGG
AAGAAGGAGAGGATGATGATCACGAGGAGTACTAAACACGGGATGGCTTTGTTTGTTGGATTGTATTTTCCTTTGGGTGTTTTTCAAATG
CTGCACTTAGATACATCACTGCTATTTTGTATTTTAATGGTGTCTTGTTTGCTGACATGAATTCATCTGCTATGAAAAGTTAAACGTGCT
TGTTTGATGAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc04g077020	Solyc04g077020

Genomic locations (0)

None

Library representation (42)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	9
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	9
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	34
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	8
Solanum lycopersicum	LeMiToLf01	leaf	30679	20
Solanum lycopersicum	LePS	root 5 weeks old plants	823	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	7
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	1
Solanum lycopersicum	Sl_RootSSH03	root	149	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	21
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	18
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	31
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	10
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	21
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	7
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	10
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	18
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	12
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	13
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	21
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	4
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (338)

Alignment image suppressed for unigene with 338 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (4)

Unigene	Build
SGN-U313082	Tomato 200607 #1
SGN-U334128	Tomato 200607 #1
SGN-U334129	Tomato 200607 #1
SGN-U334132	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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