Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U580194, SGN-U581484, and SGN-U592830 in the current build, Tomato 200607 #2

Unigene SGN-U213354

Unigene Basic Information

Unigene ID:	SGN-U213354
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213354
mRNA sequence:	Length: 1047 bp

>SGN-U213354 Lycopersicon Combined #3 (81 members)
CTCGTGCCGTCCAACTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCCGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGAC
GCCTCAGATTAGTAAAAAGCGAAAGTTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGA
TGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTGGTGAGAA
AGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAA
CAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAGGGCTTGCTATGGTGT
TCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTT
TAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAGGGTGTGCT
TGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCC
ACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCT
ATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTTGTTATTTATTTTCCTTTTTCACTGCCGAATACTAGATTTTACATAG
TGAACCGTTTTGCTCTAGTTTCTGTTATGTAAGATACTGACTGGCAAGCATTTTTGTTAATCTTCATCTCCCCTAATCTGTTGTGACTTT
GAAATGAAATTGTTTTTGAATTTCACTTTATTTAATGTAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	11
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	8
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	12
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (81)

Alignment image suppressed for unigene with 81 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	935	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
2	22748	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
5	56890	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20

Preceding Unigenes (1)

Unigene	Build
SGN-U143854	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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