Sol Genomics Network

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Unigene SGN-U268273

Unigene Basic Information

Unigene ID:	SGN-U268273
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268273
mRNA sequence:	Length: 1312 bp

>SGN-U268273 Solanum tuberosum #4 (90 members)
CTTTGTGGGCAGTTTAGGGACTTTCTTCCCTTATTTAAGAAGGTACCTAAGTGATCATCTAAAGAACAAGCTCTACTGACCATTTAGCAA
AGAAAAATGGCTTCCAAACATATTTTTTTCTTTGCTATTCTCTTTTTTTCAGCTGTCTCTGTTTTTGCAGAGGAGAATCCTAGCCTTGTA
ATGGACTATTACAAGGATACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCA
TTTTCTTGGCTAAGAAACATCTTCCATGACTGCTTTGTTGAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCT
GAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTT
GTTTCTTGTGCTGATATTCTTGTTTTGTCTGGTAGAGATGGCATTGTTGCTCTAGGAGGGCCACACATCCCACTAAAAACTGGAAGAAGA
GATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAACACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAGAGATTTGCTAAC
ATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATAT
CCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCAGATCCAATTCCAGACCCAAAGGCTGTGCAG
TATGTGAGAAATGACAGAGGCACACCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAACAAGGGATTAATGTTAGTTGAT
CACCAACTAGCAATGGACAAGAGGACTAAGCCTTATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCC
ATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGCAATCTCTCCAACAAGCTCCACTAATTT
GCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCTTCCTTTGTGTATGTATGTATGTATGTGTGAGGGAGGTAGTGGACAGTGAAATA
GGAATAAGATTGTTTTAATTTCTTCATGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTTCTGTTTACCCTCTT
AAGTTATGAAAGGAGGTGTTAATTTGATATTGTTTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSCH	Tubers	5038	5
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	6
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	7
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	4
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	9
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	14
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	10

mRNA member sequences (90)

Alignment image suppressed for unigene with 90 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	23	Peroxidase	342
2	21984	Plant_peroxidase Peroxidase	274
5	56259	Plant_peroxidase Peroxidase	265
1.1	101394	Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase	328
2	118419	Haem peroxidase Plant peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	263
5	128931	Haem peroxidase Plant peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	255

Preceding Unigenes (1)

Unigene	Build
SGN-U243306	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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