Sol Genomics Network

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Unigene SGN-U268320

Unigene Basic Information

Unigene ID:	SGN-U268320
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268320
mRNA sequence:	Length: 1026 bp

>SGN-U268320 Solanum tuberosum #4 (38 members)
GTCTTCTTCTCCATCTAGGGTTTGTTCATCAGATCGTCGCAGACTCGAGAGAAAAAAATGGCTCCAAAGAAGGGTGTTGCAGTAGCAGCA
AAGAAGAAGCCGGAGAAGGCGAAGGTGGTGAATCCACTGTTCGAGAAGCGGCCAAAGCAGTTCGGTATCGGTGGAGCGCTGCCGCCGAAG
AAGGACGTAACAAGGAATGTGAGATGGCCTCGGAATGTTACCCTACAAAGGAAGAAGAGGATTCTCAAGATGCGATTGAAGGTTCCTCCT
GCTCTTAACCAGTTCACCAAAACCCTTGACAAGAACCTCGCTACAAACCTTTTCAAGATGCTTCTTAAGTACAGGCCTGAGGACAAAGCT
GCAAAGAAGGAGCGTCTTGTCAAAAGGGCTCAAGCTGAAGCCGAAGGAAAAACTCCCGAAACAAAGAAACCTATTATTGTGAAGTATGGG
CTTAAGCACATCACTTACCTTATTGAGCAGAACAAAGCTCAGTTAGTAGTGATTGCTCATGATGTGGACCCAATAGAGTTGGTTGTCTGG
CTTCCTGCACTATGCAGAAAGATGGAAATTCCTTACTGCATTGTGAAGGGGAAAGCACGTTTAGGATCGATCGTGCATAAGAAAACTGCT
TCAGCCTTGTGTTTGACAACCGTGAAGAATGAAGACAAAATGGAGTTCAGCAGAGTTTTGGAGGCAATTAAGGCCAACTTCAATGATAAG
TATGAAGAGAACAGGAAGAAGTGGGGTGGTGGTATCATGGGCTCCAAGTCACAGGCCAGGACCAAGGCCAAAGAGAGAGTTCTTGCTAAG
GAAGCTGCCCAGAGGTTGAACTAAGAGCTTGCTGTGATATATACACTGCTATTGGATTCGAGAGAGCAACTCCAATTTTTGTGTTTGGTT
CACATGCTTGGCAATGTTAGAGATATTAGTTCGATAAGTACCATTATGTTTGCCTTTTGCAGATTATTGCTCTGTCGAAGCTTAAAATTA
TAACTTTATCAGAAGTTCTTGTTAGAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ241858	DQ241858 60S ribosomal protein L7A
DQ268850	DQ268850 60S ribosomal protein L7A

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	9
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	7

mRNA member sequences (38)

Alignment image suppressed for unigene with 38 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	281	Ribosomal_L30e Ribosomal_L7A	56
2	23167	Ribosomal_L30e Ribosomal_7A Ribosomal_L7A Ribosomal_L7Ae	15
5	57336	Ribosomal_L30e Ribosomal_7A Ribosomal_L7A Ribosomal_L7Ae	14
1.1	101904	Peptidase S16 lon N-terminal - Molecular Function: ATP-dependent peptidase activity (GO:0004176) - Biological Process: ATP-dependent proteolysis (GO:0006510)	29
2	119597	Ribosomal protein L7A - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein L7Ae/L30e/S12e/Gadd45 Ribosomal protein L7AE - Cellular Component: ribonucleoprotein complex (GO:0030529) - Biological Process: ribosome biogenesis and assembly (GO:0042254)	14
5	129924	Ribosomal protein L7A - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein L7Ae/L30e/S12e/Gadd45 Ribosomal protein L7AE - Cellular Component: ribonucleoprotein complex (GO:0030529) - Biological Process: ribosome biogenesis and assembly (GO:0042254)	14

Preceding Unigenes (3)

Unigene	Build
SGN-U243900	Solanum tuberosum #3
SGN-U243901	Solanum tuberosum #3
SGN-U243902	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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