Sol Genomics Network

Unigene SGN-U268535

Unigene Basic Information

Unigene ID:	SGN-U268535
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268535
mRNA sequence:	Length: 2153 bp

>SGN-U268535 Solanum tuberosum #4 (42 members)
GTTCAGAGAAGGAAGAACGCTGCAGAGAAGAGACGCCGCCGCAGGAATCCATAGGATTAGAGATATGGGCGAGGGAGGTGTAGTAGTCCC
AGAGTCGGTATTGAAGAAGCAGAAAAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGA
GAATCGCAAACTTATCTATAACAGAGCTAAACAGTATGCGAAGGAGTACTCAGAGCAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGC
ACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCTAAGTTGCTCTTCATCATCAGGATCCGTGGGATTAACGCAATGCCCCCTCAGAC
AAAAAAGATTCTGCAGCTTCTCAGATTGCGGCAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAG
GGTTGAGCCATATGTTACATACGGCTATCCCAACTTGAAGAGTATTAAAGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCA
GAGAATTGCTTTGACCGACAATGCTGTTGTTGAGCAGGTGTTGGGCAAACATGGAATTATTTGCATCGAAGATCTCGTCCACGAGATCAT
CACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTCAAAAAGAAGAGAAA
CCACTATGTTGAAGGTGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAAAGCATTTCTCACTAA
GCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACTGTTTGTAATATTGAACTAGACGCATTTCTATCAGAGGTTAAAAA
ATAGTCTTTGGATTAAGTATACCAGTTGCCTCTGGTTTTCTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTTATATTATG
GTGTGTTGTTAGGTGGAAATTGATAGAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGCTTCAGGCTACATAGCTT
CATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCCAATGATAAAAAAAAGACAGATCACTTGA
CATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTG
AAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAGGCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTA
ATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAGCCAA
GAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGCTCTGGTATGTGCTTTCGAAGACAT
TAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCAGTTTGTTGC
AACCAACACTTAATACAAGTGCTGCTGCCATCTTACAATTGCTAAATGGTTCTGAAACTTACCCAAATTATACATTTGGTTGGGTTAATG
TGAAAGATGTCGCCCTCGCGCATATTCTAGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACT
CTGAGATAGTAAAGATATTACGCGAGCTTTACCCTACAATGAAGCTTCCAGAAAAGTTAACGTCGAAAGAACCAAAAAATTGGGTATTGA
ATTCATTCCCTTGGCTGAAAGCCTCAAGGAAACTGCTGAGAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCACAGCCTTATTGTGAATG
AATCTGCAAATTCTAAAGAACATGCTTATGTACCTTCATGTTTTACTAAAACCTTTCATATTATATCGTTTTGTGATCCGCAACTTTAAT
GGTGTCGTCAAGTGTAAACGTTTCGTGGATGTAGTAGAATCCGTATATTTGATCGATGTGATCTTTTGTGTTTGGAGGTTACA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ228335	60S ribosomal protein L7 (At2g44120)

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	6
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	7
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	7
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (42)

Alignment image suppressed for unigene with 42 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	65	3Beta_HSD	184
2	22015	3Beta_HSD	144
5	56492	Ribosomal_L30_a Ribosomal_L7_euk Ribosomal_L30	37
1.1	101435	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	166
2	118460	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	116
5	129264	Ribosomal protein L30 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal L30 N-terminal Ribosomal protein L7 eukaryotic form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) - Molecular Function: transcription regulator activity (GO:0030528)	28

Preceding Unigenes (2)

Unigene	Build
SGN-U244222	Solanum tuberosum #3
SGN-U246475	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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