Sol Genomics Network

Unigene SGN-U268611

Unigene Basic Information

Unigene ID:	SGN-U268611
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268611
mRNA sequence:	Length: 1631 bp

>SGN-U268611 Solanum tuberosum #4 (94 members)
GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGGCGATACGTCTCTCCAGTGAGTCATCTCAGCCAACTGGAGTGTATTCT
TCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCCAAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGT
GCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCA
AATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAG
TACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCAT
CCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG
AAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTA
ATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG
GAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTAC
CATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGAC
ATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATT
GTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGATACAGTGGAGATGTT
TGGTACCCACAACCAGCTCCCAAGGACCATCCATGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGAT
GCACAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAG
GATGGGGAATTGGCACCTCAGTATCGCTAAATCATTAATGTACCTTAGTTGTGCCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGCGT
CTTCAATAAGCTGATAAAATTGGCTACTTATGTTCTTTTAGAACTGTAATGCAGTTTTTCTTCGGTTGGCTGTATCGTAACTTTTGCGAT
GGAAACATGTCCTCTTCTGTGATGGAGGTCTATGTATGAGCCTCCAGTGTCTTTCTTGAGTCTATAACTGGGAAACTTCCTTGCTATGGT
AGTTGTACTGGTGTTGTCCTGGACATTTTATGATTAAAAAAATATTTTCTTCTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAG
ACTAGTTCTCT

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
fdh1	formate dehydrogenase	formate dehydrogenase
fdh3	fdh3 pseudogene	pseudogene

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	PPC	leaf 6 week old	5062	10
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	6
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TUBS	Tubers	5976	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	11
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	10
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	19
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (94)

Alignment image suppressed for unigene with 94 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	207	2-Hacid_DH_C	71
2	24067	GlutR 2-Hacid_DH 2-Hacid_DH_C Adeno_fiber2	9
5	58123	GlutR 2-Hacid_DH 2-Hacid_DH_C Adeno_fiber2	9
1.1	101571	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	70
2	121867	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	6
5	132073	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U243456	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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