Sol Genomics Network

Unigene SGN-U268740

Unigene Basic Information

Unigene ID:	SGN-U268740
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268740
mRNA sequence:	Length: 1471 bp

>SGN-U268740 Solanum tuberosum #4 (53 members)
GTTTAGGTTTCTTCTTCGCAGCCATCAATCAGCGCAGCGCCAGCCCATTGAAGCGAAAATGGTGAAGGGACGCCAAGGAGAACGCGTTAG
ACTCTACGTTAGAGGAACTGTTCTTGGATACAAAAGGTCGAAATCGAACCAGTATCCCAACACTTCGTTGATTCAGATCGAGGGAGTGAA
CACTAAGGAAGAAGTGGACTGGTACCTTGGGAAGAGGCTGGGATACATCTACAAGGCAAAGACAAAGAAGAATAACTCGCACTATCGTTG
CATTTGGGGCAAAGTTTGTAGGCCACATGGAAACAGTGGCGTTGTTAGAGCTAAGTTCAAGTCCAATTTGCCTCCTAAATCCATGGGAGC
TAAGGTTAGGGTTTTCATGTACCCAAGCAACATTTAAGTGGGCATTTAGAGGTCAAGGATCTTGATTGAAATCGTTGGTTGCTTTGGGTG
GCTATTGTGTGCTACATCAATGTTCTCAATGATGAGGAATCTTCATCCTAAAAAGTAGTTAGTTAAATTTTGTATTGTGCTTTGTGGAGT
CTCATCTTATCTTTTTCGTTTTTATCATTTCTGGTTAATACCAAGACTGATACATCTGATTAGATGCGACTAATTTTGCTTATGGAGCAA
TGCAACTTTTTTGTATGACTATTCAGCTGTGATTTTGCTTTAAAAAAAATTATACTCTTAAACAGTGGCCGCCGCTGGTTTAGTCTCTCC
TCTCTTTTGCCTGGTTTAGTCTCCTCTCTCTCTATCCCTTAACGTAGTATTAATTCCTCATTCCTCTCTTAGCTGTGGAGATATTTTGTA
GCGGCGGCGAGCGATGGAGCTGAAACTATCCTTCCCTGCGGATTCTCCGCCTTTGGCTGTCATTGCGGCGGCGAAGATCGCCGGAGTTCC
AATCTCTACTGATCCAACTCTTACTCCTGGTTCTACTCCTATTATACATCTAGATAATGGACTGAAGCTGCGGGGAAATTTTGTGCTTCT
GAGGCACATTAGTCGGGTTGCTAACATACCCGATCTGTACCAGCGGGACGCCATTGAGTCTAGCCAGATAGACGAATGGCTAGAGTATGC
TCCTATATTTGCTTCTGGCTCTCAATTTGAGGAAGCATGTGGCTACGTGGATGGATATCTTCTGCAGCACACATTTCTTGTTGGACATAG
CCTCTCAATTGCAGATATTGCAGTTTGGTCTGGCCTTGCAGGTACTGGGAAGAGATGGGAAAGCCTACGATCATCTAAGAAGTACCAAAA
TCTGGCAAGGTGGTTCAACTCAATATTAGCTGAATATGGTGTTCTAAATGAAGTCACAGCAACATATGTGGGAAAGAAAGGCTCCGTAAA
GCCAACTGCATCCAAAGTGAAAGAGCAACAAGGCTCAAATGCTAATCTAGCTAAAGTAAATGGTGATGCCGCTGACAAGGAAAAGAAAGT
AGGAAACCGACATCTGAGGTAGATCTTCCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	5
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	11
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	5
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	376	Ribosomal_L35AE Glu_tRNA-synt_1c	45
2	22463	Ribosomal_L35AE	28
5	56911	Ribosomal_L35AE	20
1.1	101742	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Glutamyl-tRNA synthetase class Ic - Molecular Function: glutamate-tRNA ligase activity (GO:0004818) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glutamyl-tRNA aminoacylation (GO:0006424)	41
2	118818	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129394	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	22

Preceding Unigenes (1)

Unigene	Build
SGN-U243569	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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