Sol Genomics Network

Unigene SGN-U268797

Unigene Basic Information

Unigene ID:	SGN-U268797
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268797
mRNA sequence:	Length: 1519 bp

>SGN-U268797 Solanum tuberosum #4 (37 members)
CTTCAGTTCTTCAATTATCAGCCGCTTTGGTTAGGTTTTCACACTACCCACAAATTTGTTTCTCTTCAAAATACCCACAAATTCATCTTC
GCATGGATTTTAATCTATAGGGGTTTCTTGATTTATTGAAAAAATTCGGTTCTTTGCATCACTCTCTCTATATATCTGTTTAGGAACTCC
GAGAAGAGTGAAAAAAATGGCTACTTTGAACCCATTCGACCTTTTGGATGATGATGCTGAGGACCCAAGTTTGCTAGTTGCTGCTCAGCA
GCTAAAGGCTCCTGTTGCATCTGCACCAGCCAAGAAGGGTCCAGTTCAGCCTACTAAGCCTGCTGCTAAGTTGCCCTCCAAGCCGGTTCC
TCCTTCTCAGGCTGTGAGGGAAGCCAGGAGTGACGGCCAGCGAGGAGGTCGTGGGGGTCCACGTGGTGGAGCCCGTGGTCGTGGGCGTGG
ACGTGGGTTCAACCAAGATTTTGCTGCTGATGAGAATGCTTTTGGCAGCAATAATGGATCCTCTGGGCGGTACAGTGCTCCAGAAGATGG
AGAATCAGGAAAGGTTTCTGAAAGGAGAGGTGGATACGGTGGATCACGTGGGGGGTTCCATGGAGGTCGTCGTGGTGGTTTCAATAACGG
GGATTCTGCAGAAGGAGAAGGGGAACGCCCAAGGAGAGTGTTTGATCGACGAAGTGGAACTGGCCGTGGGAATGAGTTTATTAAACGGGA
GGGCTCTGGTCGTGGGAATTGGGGAACTACTGCAGATGATATTGCACCGGAGACTGAAGTACCTGTTATTGATGGTGAGAAGATTGTTGA
GGCTGAGAAACAAGCTGGACAGGAAGATGCTGGAGACACCAATAAGGAATCTACCGCTGCTGAGCCAGAAGAGAAGGAACCTGAGGAGAA
GGAGATGACCCTCGAGGAGTATGAGAAGGTAATGGAAGAGAAGAGGAAGGCTTTGGTGGCTCTAAAGCAAGAGGAAAGAAAGGTTAATTT
GGACAAAGAACTTCAATCCATGCAACTTCTCTCAAACAAGAAGAATGATGATGAGATCTTCATCAAATTGGGTGCTGAGAAAGATAAGAA
AAAGGAGGCAGTGGAAAAAACCAAAAAGACCAAAAGCATAAACGAGTTTCTGAAGCCTGCTGAGGGAGAAAGTTACTACCGCCCTGGTGG
CCGTGGTAGGGGCCGTGGCCGTGGAAGAGGTAATGGCGGTGGATATGGTGGAATCAACAGTGTTTCAGCCCCATCCATTGAAGATGTTGG
TCAATTCCCCTCCTTGGCTGTCAAGTAAGGGAGCAAGTCCTGCATGGATTAGGTAAAAAAGGAAGCAAAAGCAACTTTTGTCGTCTGATC
TGTCTTCCTTTTTCCGTCATTTATGAAATTTGGGATTTGATGATAACATAATGTTTCCTGGAACCCTTTGGTTTTCCTGTATTAGAATTT
TTTTTTGCTAACTTTATAATTGGTCTTTAGTGTAAATTTAGATGGTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ207876	DQ207876 nuclear RNA binding protein

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	14
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	657	HABP4_PAI-RBP1	28
2	22466	HABP4_PAI-RBP1	28
5	56629	HABP4_PAI-RBP1	28
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118794	Hyaluronan/mRNA binding protein	30
5	129226	Hyaluronan/mRNA binding protein	30

Preceding Unigenes (2)

Unigene	Build
SGN-U243613	Solanum tuberosum #3
SGN-U243616	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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