Sol Genomics Network

Unigene SGN-U268964

Unigene Basic Information

Unigene ID:	SGN-U268964
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268964
mRNA sequence:	Length: 1539 bp

>SGN-U268964 Solanum tuberosum #4 (36 members)
GAGAGAACTAGTCTCGACTTTTAGTTTTTCTTTTTTATTCTTTTTTGGAATTTCCACAACTCTTCTCTTTACCGTTTCGTCTCTGTACTT
ATATATCAGCTTTGCGAGAATCGGTGCAGCTTTTTAAGCGTTGACCGTTTTGGTTTATCCCCGGATTTGAATTATCCGACTATCAGTTTA
TCTTATATTGAAATGAGTCTACAACAGGAATCACACCGTCATCACCGATTTGGAAATCCGTTTAAAATGATATTATCACCCAAGGGCTCA
TATTTGTCTCCTAAACTCCTTGCTCTGTTGAATTCATTTGAGCAGACCTTAGCAGGGAGACTCAAGAGTCTTAAACCTGGAGGCAAGGAA
GATATCCTTAGCCTTTCATGGATGAAACAAGCAATAAGCACACTTTGTGCAGTCCATACAGATGTGAAAACTCTTATTACTGATCTCGAG
CTTCCTGTATCTGACTGGGATGAGAAGTGGATTGGTGTCTACTTGGACAATAGTTTAAGGATGCTGGATATGTGTGTAGCCTACAGCTCT
GAGATTTCCAGGCTTAGCCAAGGCCACCTTTATCTTCAGTGCAGCTTGCACAAGCTGGATGGCTCCTCAACACAGTTCATGAAGGCTCGT
TCTTCATTGGATGGATGGAAGCAGCACATTAATGCAAAGAACCATAGACTGGAAAATTGCTTTGCCATCTTGGACAGCCTCACTGAATCA
CTGAACCTACCCAAGATTAAGAATTCTGCTAAAGGGAAGGTTCTGATGCATGCGATGTATGGAGTGAGGGTTGCAACTGTTTTCATATGT
AGCATCTTTGCTGTTGCATTCTCGGGTTCTGCAGCAAAATTGAAAGATCTGCAGGTTCATGAGACTTGCTTATGGACAGAAGCTTTTGTT
GATCTTCGTGATTTTATTAGTGGTGAGATCAGGGGCATATATTCTGGAGGGAAATTCACAGCACTGAAGGAGCTTGAAGCATTGGATGTT
AGTGTGAAGAAGATATACCCAGTCATACAGGATGGAGTAGACCCTATTGACGCGGCACAGTTAGAAATTCTAACTTCAGATCTGACTAAA
AAAACAGAATTTTTTTCGGTAGGACTAGATCTCCTAGCAAAGGAGACAGATAAGTTCTTTCAAATCCTTCTAACTGGACGCGATGCTTTG
CTTTGTAACCTTAGAGTTGGTAGTGCAGTCGTTAAACCAGCCCATCCAAACAACAATGTACATAAACAAATGGTGAAGTGATGGTTAAGA
AAGCGAGTATCTTTTGTGTATACACATGGGTGCGTGTGTCAATGCGGAGTTTTGTGCTTTCTGGTTAAATATGATGTACTGCTAAGATGT
GCAATATATAATATTTGTTGTGATCAAGGTTGTGTAATTTATTGTGGTAAAGGTTGTGTATTGTGGCCATATAGGTGTTTTATAATGATC
AATATATGTCTGTACTCCTCTACTACGTCAACGATGTATAAAAGAAGTTTATGGTTCAATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AGGGGGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	844	DUF793	22
2	23139	DUF677	15
5	57310	DUF677 DUF793	14
1.1	101963	Glutathione S-transferase C-terminal-like	26
2	119632	Glutathione S-transferase C-terminal-like	13
5	130083	Glutathione S-transferase C-terminal-like	12

Preceding Unigenes (1)

Unigene	Build
SGN-U243753	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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