Sol Genomics Network

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Unigene SGN-U269173

Unigene Basic Information

Unigene ID:	SGN-U269173
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269173
mRNA sequence:	Length: 707 bp

>SGN-U269173 Solanum tuberosum #4 (32 members)
TAAAAGTGATAGCTTTTTTTTTTCTTCTTTGAGGTCCAAGGGTTTCCAGATTATTGAAAGGCGATTTTGATTTTTGTTGCTGTTCAATCG
ATTTCAGTAACTTGAGCTATGGGAAAGAGGAAGGCAAAATCAAAGCCACCTCCAAAGAAGAGGATGGACAAACTTGATACTGTTTTCAGC
TGTCCTTTCTGTAGCCATGGCACCAGCGTGGAATGTCGCATTGATATGAAAAACTTGATTGGTGAGGCAAATTGCAGAATCTGCCAAGAG
AGCTTCAGCACCACTGTCACAGCGCTAACAGAACCTATTGATATATATAGTGAATGGATCGACGAGTGTGAACGAGTCAACAACTATGAA
GAAGAAGATGTTTCTTATAGATCCTGATGAACTGCTCAGGACTGTGAGTAGACCAACGGGCAATAGTTCTGTCTCACTGCCTCAGATGAA
CGTGAAACTTATCCAGGCCTCGCTGGAGTCTAATAATAAGTAACTCCATTTAAGAGGCTTTCTATGTCTAAATAGTTTGAAATAGACGCA
GAACCTATCTTGTTTATATTCTGCTTGTGCAAGTACAACTGTTTCTATGAAATTGGATTAACGACGTATCTACCTAAAAACAAGTAGTTT
TATTTCTCCCATTACATGATGTCTCAAGTACATGTTAAGCCCTTCACCATAGGGTGACTGTTCAAACCATATCTGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSWB	Tubers	6124	5
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	5
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1983	DUF701	9
2	24102	DUF701	9
5	58157	DUF701	9
1.1	101617	PSP proline-rich Ubiquitin - Biological Process: protein modification (GO:0006464) Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) Cyclin-like F-box Protein of unknown function DUF382 - Cellular Component: nucleus (GO:0005634) - Biological Process: mRNA processing (GO:0006397) UL92 RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676) Protein of unknown function DUF701 zinc-binding putative	57
2	120252	Protein of unknown function DUF701 zinc-binding putative	10
5	130788	Protein of unknown function DUF701 zinc-binding putative	9

Preceding Unigenes (1)

Unigene	Build
SGN-U244097	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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